3E3^^!^^^^^^^^^^^B3E nUarine Biological Laboratory Library Woods Hole, Mass. PreBented ty INTEBSCIENCE PUBLESHEKS. INC Nefw lork City B^^^^^^s^^^^^^^ai CURRENTS IN BIOCHEMICAL RESEARCH 1956 6- CURRENTS IN BIOCHEMICAL RESEARCH 1956 Edited by DAVID E. GREEN Twenty-seven essays charting the present course of biochemical research and considering the intimate relationship of biochemistry to medicine, physiology^ and biology INTERSCIENCE PUBLISHERS, INC., NEW YORK Interscience Publishers, Ltd., London 1956 1956 by Interscience Publishers, Inc. Library of Congress Catalog Card Number 56-9503 Interscience Publishers, Inc. 250 Fifth Ave., New York 1, N. Y. For Great Britain and Northern Ireland: Interscience Publishers Ltd. 88/90 Chancery Lane, London, W.C. 2, England PRINTED IN THE UNITED STATES OF AMERICA BY MACK PRINTING COMPANY, EASTON, PENNSYLVANIA PREFACE Ten years ago the first volume of Currents in Biochemical Research made its debut. The cordial reception which was given this volume by biologists, chemists, biochemists, and clinicians indicated clearly that at appropriate intervals there exists a real need to pause and reflect on what has been accom- plished, to distinguish between tree and forest, to learn the lessons of the years which have passed, and to prepare intellec- tually for the years to come. Once again a distinguished group of twenty-seven contributors has been invited to make a de- cennial survey of progress in most, although by no means all, important fields of biochemical research. They have been asked to write as simply and as lucidly as the requirements of scholarship permit. The objectives of these essays have been to communicate to nonspecialists an overall impression of the present status of the significant problems in each field, to point up the broad strategy of current research, and finally, to specu- late on the likely paths of future research. Above all, the essays were intended to bring light without overwhelming the reader with tedious detail. It would be too much to expect that each of the twenty-seven essays has met all these exacting stipulations, but at least I have high hopes that enough of them come sufl^- ciently close to justify the aims of this second volume. The past decade has witnessed a rate of progress vastly greater than in any comparable period since the early beginnings of biochemistry as a science more than 100 years ago. There is little doubt that this phenomenal rate of development has been sparked by a revolution in methodology. The emergence of filter paper chromatography as a tool for separating minute PREFACE amounts of material rapidly, selectively, and even quantita- tively, gave wings to biochemistry. In turn, this led to the intensive exploitation and development of a large variety of adsorption and partition procedures which almost overnight made it not only possible, but even relatively simple to separate and isolate constituents of any mixture, regardless of how similar the constituents may happen to be. Isolation ceased to be a roadblock or a major difficulty in biochemical investigation. The spectrophotometer occupies a preeminent position among the instruments which have facilitated the dramatic advances in methodology. This was of course not a new physical tool, but until some ten years ago it was a highly ex- pensive, custom-built apparatus available only to relatively few laboratories with considerable resources. With the advent of the mass-produced spectrophotometer, the universal application of spectrophotometric techniques to biochemical problems became possible. It is no exaggeration to say that spectro- photometry has increased manyfold the forward rate of progress of biochemistry. Other tools and techniques have played an equally im- portant role in the revolution of biochemical methodology during the past decade. The isotope technique with its count- less ramifications and variations and the mass-produced ultra- centrifuge and electrophoresis apparatus were also very domi- nant factors in the over-all picture. With such a plethora of powerful tools available, structural problems that had long resisted solution were dusted off the shelf and liquidated in record time. Nucleotides, nucleic acid, polysaccharides, lipides, polypeptides, and even some proteins of low molecular weight were no match for the many and incisive methods which were brought to bear in the elucidation of stucture. Even efforts at synthesis took a new lease of life now that effective methods were available for separation of similar reaction products, or isomers, as in the case of nucleotides. It was a triumph of methodology to ferret out the exact structural formula of insulin and to accomplish the synthesis of flavin vi PREFACE adenine dinucleotide and vasopressin to mention but two out- standing examples. Methodology was not the principal limiting factor in all structural problems. The solution of the problem of the molecular architecture and stereochemistry underlying protein structure required new ideas and concepts as well as more powerful tools for analysis. The helix principle which has been shown to apply successfully to a variety of proteins and to nucleic acid has provided one of the keys for deciphering the hitherto unintelligible x-ray diagrams of a variety of macro- molecules. A direct consequence of the advances in methodology was the growth of enzyme chemistry from a toddler to a giant dominating the whole of biochemistry. During the past ten years practically all the enzymatic and chemical details of the citric, pentose, fatty acid, and urea cycles have been elucidated. The enzymatic synthesis of nucleic acid, lecithin, cephalin, fatty acids, sucrose, lactose, purines, pyrimidines, and dinucleo- tides has been accomplished by means of isolated enzymes or cell- free enzyme systems. The chemical details of the reactions which intervene in the enzymatic synthesis of hemin and cho- lesterol are now almost fully documented. Hundreds of enzymes which implement not only the above sequences but many others too numerous to be listed have been isolated, character- ized, and studied in detail. Indeed few of the classical problems of metabolism remain unsolved or are not already close to solution. The list of coenzymes has more than doubled during the past ten years. Lipoic acid, coenzyme A, uridine diphospho- glucose, uridine diphosphogalactose, uridine diphosphoglucu- ronic acid, glucose- 1,6-diphosphate, 1,3-diphosphoglyceric acid, guanosine diphosphate, molybdenum, and cytosine diphospho- choline are some of the more prominent recent additions to the roster of known cofactors. The era of each investigator preparing his own cofactors, special chemicals, and even enzymes is now all but over. A Vll ^^\CjAi jf PREFACE whole new industry has sprung up which provides practically every important biochemical compound relatively inexpensively and of high purity. The importance of this development to the rapid progress of biochemical research cannot be underesti- mated. Enzymology has indeed prospered by application of new methodological tools but the traffic has gone both ways. In turn, the enzymes have proved to be tools of such breath-taking elegance and simplicity as to revolutionize the tactics of deter- mining structure or of analyzing for minute amounts of material. The elucidation of the structure of nucleic acid, of nucleotides, and of various nucleotide cofactors has been accomplished principally, if not exclusively, by enzymatic procedures and with relatively small amounts of compound. The current procedures for isolating enzymes are still largely classical, but signs are multiplying that big changes in methodology are imminent. Chromatography on columns of cellulose derivatives or of calcium phosphate, electroconvection, starch and filter paper electrophoresis, ion exchange resin chromatography, and partition methods are portents of the things to come. In recent years there has been a growing recognition of the role of integrated enzyme systems in cellular processes. The concept of the mitochondrion as an organized mosaic of several hundreds of enzymes linked together structurally as well as functionally and with unique operational principles is now well established in biochemical thinking. It is only in terms of large molecular aggregates and of enzymes bonded together in a precise pattern that it is at all possible to approach problems such as oxidative phosphorylation, electron transfer, and muscular contraction. The organized enzyme systems have provided the bridge between classical enzyme chemistry and cellular proc- esses. In addition to the mitochondrion, other functional particles have been described such as the chloroplast in photo- synthesis, and microsomes and nuclei in protein synthesis. Progress in the field of the physical chemistry of biological viii PREFACE systems and materials has been slower but still impressive. Kinetic analysis of enzymes has graduated to a very sophisticated and exact science which has been taken over by specialists well grounded in physical chemical theory and practice. The con- cepts of energy transformations and of the high-energy bond have lost their earlier primitive character and are now couched in the more rigorous language of quantum mechanics and valency theory. The interpretation of the properties and behavior of proteins and other macromolecules has now attained a high degree of precision. Certainly the molecular picture of how myosin contracts is constructed in terms which would have been inconceivable even ten years ago. It now appears that biochemistry has reached a stage in development where fragmentation cannot be avoided. The choice now lies between chemistry and physiology since the meso area has all but disappeared. The classical areas of bio- chemistry such as nutrition, vitamins, minerals, enzymology, metabolism, and the chemical structure of biologically im- portant compounds are becoming leaner and leaner, and the focus is shifting inexorably either to more chemical and molecular aspects or to the broader and as yet unsolved physiological problems. It is at present quite clear which chemical problems will dominate the scene in the next few years. Certainly efforts will be redoubled to determine the exact stereochemistry of protein molecules after the spectacular success of the a helix concept. Such efforts will be paralleled by companion efforts to elucidate the structure of the active groups of enzymes. Once an under- standing of the architecture of the active groups of enzymes has been attained then the old problem of the mechanism of enzyme action will be in line for renewed assault. The nature of the forces and bonds which lead to enzyme-substrate interactions is an area of investigation which badly needs sparking by new leads. The real frontier areas of biochemistry now reach to the borderlines of physiology, genetics, cytology, medicine, and ix PREFACE theoretical chemistry. The biochemical description of muscular contraction, nerve conduction, glomerular filtration, and secre- tion and membrane phenomena is still relatively virgin territory. The structural analysis and interpretation of the way in which mitochondria, nuclei, membranes, myelin sheath, and other complex cellular structures are constructed in a chemical sense have yet to reach even the blueprint stage. A fabulous area of exploitation awaits the investigators who can hurdle the con- ceptual barriers in the way of the biochemical study of hormone action at the molecular level. If current progress on the re- construction of in vitro systems for synthesis of protein is to serve as a guide, then we must surely anticipate the polygamous marriage, in the not too distant future, of biochemistry with genetics, immunology, hematology, and virology. The older problems of biochemistry are clearly moribund but the newer problems have the fascination and challenge of youth. David E. Green February 7956 X CONTRIBUTORS Robert A. Alberty, Ph.D. Associate Professor of Chemistry, University of Wisconsin, Madison, Wis. Eli Lilly Award, 1956. H. A. Barker, Ph.D. Professor of Plant Biochemistry, University of California, Berkeley, Calif. James A. Bassham, Ph.D. Assistant Director, Photosynthesis Laboratory, Bio-Organic Chemistry Group, Radiation Laboratory, University of California, Berkeley, Calif. KoNRAD E. Bloch, Ph.D. Higgins Professor of Biochemistry, Harvard University, Cambridge, Afass. Jean Botts, Ph.D. Physiologist, Division of Physical Biochemistry, Naval Medical Research Institute, National Naval Medical Center, Bethesda, Md. Melvin Calvin, Ph.D. Professor of Chemistry, and Director, Bio-Organic Chemistry Group, Radiation Laboratory, University of California, Berkeley, Calif. All.an M. Campbell, Ph.D. Instructor in Bacteriology, University of Michigan, Ann Arbor, Mich. Britton Chance, Ph.D., D.Sc. Professor of Biophysics, and Director of the Johnson Research Foundation, University of Pennsylvania Medical School, Philadelphia, Pa. President's Certificate of Merit, 1950; Paul Lewis Award, 1950. Waldo E. Cohn, Ph.D. Principal Biochemist, Oak Ridge National Laboratory, Oak Ridge, Tenn. Carl F. Cori, M.D. Professor of Biological Chemistry, Washington University School of Medicine, St. Louis, Mo. Nobel Prize, 1947. John T. Edsall, M.D. Professor of Biological Chemistry, Harvard University, Cambridge, Mass. Philip George, Ph.D. Research Professor of Biophysical Chemistry, The University of Pennsylvania, Philadelphia, Pa. G. Robert Greenberg, Ph.D. Associate Professor of Biochemistry, School of Medicine, Western Reserve University, Cleveland, Ohio. xi CONTRIBUTORS A. D. Hershey, Ph.D. Staff Member, Department of Genetics, Carnegie Institution of Washington, Cold Spring Harbor, N. Y. Frank M. Huennekens, Ph.D. Associate Professor of Biochemistry, School of Medicine, University of Washington, Seattle, Wash. Luis F. Leloir, M.D. Director of the Instituto de Investigaciones Bio- quimicos, Buenos Aires, Argentina. Fritz Lipmann, M.D., Ph.D. Head, Biochemical Research Laboratory, Massachusetts General Hospital, and Professor of Biological Chemistry, Harvard Medical School, Boston, Mass. Carl Neuberg Medal, 1 948 ; Mead Johnson & Co. Award, 1948; Nobel Prize, 1953. B.-VRBARA Lo\v, Ph.D. Assistant Professor of Physical Chemistry, Depart- ment of Biological Chemistry, Harvard Medical School, Boston, Alass. Henry R. M.ahler, Ph.D. Associate Professor of Chemistry, Indiana University, Bloomington, Ind. Manuel F. Morales, Ph.D. Chief of the Division of Physical Bio- chemistry, Xaval Medical Research Institute, National Naval Medical Center^ Bethesda, Md. American Physiological Society Travel Award, 1950. David Nachmansohn, M.D. Professor of Biochemistry, College of Physicians and Surgeons, Columbia University, Nevu York, N. Y. Pasteur Medal, 1952; Carl Neuberg Medal, 1954. Gregory Pincus, D.Sc. Director of Laboratories, The Worcester Founda- tion for Experimental Biology, Shrewsbury, and Research Professor of Biology, Boston University, Boston, Mass. Efr.mm Racker, M.D. Chitf, Division of Nutrition and Physiology, The Public Health Research Institute of the City of New York, Inc., and Adjunct Professor, Department of Microbiology, New York University College of Medicine, New York, N. Y. Harold P. Rusch, M.D. Professor of Oncology, and Director of the McArdle Memorial Laboratory for Cancer Research, University of Wisconsin, Madison, Wis. Frederick Sanger, Ph.D., F.R.S. Aiember of the External Staff of the Medical Research Council, Department of Biochemistry, University of Cambridge, Cambridge, England. David Shevhn, Ph.D. Professor of Biochemistry, College of Physicians and Surgeons, Columbia University, Neiv York, A\ Y. Xll CONTRIBUTORS Esmond E. Snell, Ph.D. Professor of Chemistry, and Associate Director of the Biochemical Institute, University of Texas, Austin, Texas. Eli Lilly- Award, 1945; Mead Johnson & Co. Award, 1946; Osborne- Mendel Award, 1951. S. Spiegelman, Ph.D. Professor of Bacteriology, University of Illinois, Urbana, III. DeWitt Stetten, Jr., M.D., Ph.D. Associate Director in Charge of Research, National Institute of Arthritis and Metabolic Diseases, National Institute of Health, Bethesda, and Lecturer in Medicine and Physiological Chemistry, The Johns Hopkins University, Baltimore, Md. D. M. Surgenor, Ph.D. Assistant Professor of Biological Chemistry, Harvard Medical School, Boston, Mass. Hugo Theorell, M.D., Professor. Head of the Medical Nobel Institute, Biochemical Department, Stockholm, Sweden. Nobel Prize, 1955. Irwin B. Wilson, Ph.D. Assistant Professor of Biochemistry, College of Physicians and Surgeons, Columbia University, New York, N . Y . Xlll CONTENTS Chemistry and Viral Growth by A. D. Hershey 1 Photosynthesis by J. A. Bassham and M. Calvin 29 Bacterial Fermentations by H. A. Barker 70 Some Aspects of Vitamin and Growth Factor Research by Esmond E. Snell 87 The Significance of Induced Enzyme Formation by S. Spiegelman and A. M. Campbell 115 Certain Problems in the Biochemical Study of Disease by DeWitt Stetten, Jr 162 The Hormones, Their Present Significance, Their Future by Gregory Pincus 176 Problems of Cellular Biochemistry by Carl F. Cori 198 Enzymes as Reagents by Efraim Backer 215 Attempts at the Formulation of Some Basic Biochemical Questions by Fritz Lipmann 241 Enzyme Complexes and Complex Enzymes by Henry B. Mahler 251 Relations between Prosthetic Groups, Coenzymes and Enzymes by Hugo Theorell 275 Enzyme-Substrate Compounds and Electron Transfer by Britton Chance 308 On the Nature of Hemoprotein Reactions by Philip George 338 Aspects of Protein Structure by Barbara W. Low and John T. Edsall 378 The Structure of Insulin by F. Sanger 434 A New Concept of Ribonucleic Acids by Waldo E. Cohn 460 XV 71253 CONTENTS Chemical Structure as a Guide to the Study of Biochemical Syn- theses by Konrad Block 474 The Role of Nucleotides and Coenzymes in Enzymatic Processes by Frank M. Huennekens 493 The Biosynthesis of Porphyrins; The Succinate-Glycine Cycle by David Shemin 518 Problems in the Study of Multiple Enzyme Systems by G. Robert Greenberg 537 Enzyme Kinetics by Robert A. Alberty 560 The Interconversion of Sugars in Nature by Luis F. Leloir 585 A Theory of the Primary Event in Muscle Action by Manuel F. Morales and Jean Bolts 609 Trends in the Biochemistry of Nerve Activity by David Nachmansohn and Irwin B. Wilson 628 Blood : Some Functional Considerations by Douglas M. Surgenor 653 An Integrated Concept of Carcinogenesis by Harold P. Rusch 675 XVI CHEMISTRY AND VIRAL GROWTH A. D. HERSHEY, Department of Genetics, Carnegie Institution of Washington, Cold Spring Harbor, New York Introduction The points of contact between biochemistry and the central mysteries of biology — meaning here the reproduction and func- tioning of hypothetical determinants of heredity — are necessar- ily few (3). In recent years the study of viruses has emerged as one of them, important if only because of its relative isolation. Work by many investigators with many different viruses has contributed to this development, not always in tangible ways. It would be difficult, and perhaps not at present very rewarding, to trace this genealogy. Even the work with bacterial viruses has recently split into two parts calling for separate review (5,45). In this discussion I shall focus attention on what happens when bacteriophage T2 infects the common intestinal bacterium, Escherichia coli. The Reproductive Cycle Morphological, biochemical, and genetic studies have re- vealed a developmental cycle that can be represented very simply. Figure 1 names the recognized stages and processes. The basic information from which this cycle has been deduced may be summarized as follows. A. D. HERSHEY MATURATION VEGETATIVE RESTING PHAGE PHAGE RESTING PHAGE Figure 1. RESTING PHAGE Extracellular virus is called resting because it is stable and metabolically inert. Purified preparations of T2 consist of uniform tadpole-shaped particles with a polyhedral head meas- uring about 0.1 micron across, and a tail about 0.1 micron long and perhaps one-fourth as broad (2,67). The surfaces of the head and tail contain distinct antigenic proteins (36). One particle contains about 2 X 10~^° 7 of deoxypentose nucleic acid (DNA) (6,28), which can be expelled by osmotic shock leaving a proteinaceous ghost that retains the shape and some of the biological properties of the intact particle (1,21). The ratio of protein to DNA in the whole particle is about one to one. The DNA is variously reported to be released in the free state (23), or combined with protein (62). The proteins of T2 differ antigenically from the proteins of the host. The DNA of T2 contains 5-hydroxymethyl cytosine but no cytosine (69), in which respects it differs from all known examples of DNA from other organisms. Both facts suggest that virus and bacterium have pursued separate, though not independent, evolutionary paths for a long time. Otherwise these facts can be regarded as analytical aids pure and simple. INJECTION When a particle of T2 makes its specific, irreversible at- tachment to a bacterium (living or dead), the viral DNA passes into the cell, leaving the empty protein shell outside (27). This husk may now be seen adhering to the cell by the end of its tail CHEMISTK.Y AND VIRAL GROWTH (2), and can be stripped off in a Waring blendor without affect- ing the subsequent course of the infection (27). A spurious in- jection, simulating osmotic shock, can be observed when virus particles react with specific substances of bacterial origin (32), or even with an ion-exchange resin (52). The material released in this way consists of fibers 20 A or more in diameter and several microns per phage particle in aggregate length (32,67). The visible fibers are destroyed by deoxyribonuclease (32). Their number has not been counted. Several of the facts mentioned seem to show that injection occurs independently of bacterial metabolism. Benzer (4) finds, however, that an external food supply is required. The ability of the virus to inject resists multiple lethal doses of ultra- violet light, but is nearly as sensitive as the infective property to formaldehyde and ionizing radiations (27,29). At present a satisfactory m.echanism of injection cannot even be imagined. Whatever the details of injection, it seems permissible to con- clude that a resting particle of T2 consists of a protein syringe that functions chiefly to get the viral DNA into the cell, and that only the injected materials, and possibly the nonstrippable stub of the tail (amounting to 20 per cent of the total protein of the virus particle), participate directly in viral growth. VEGETATIVE PHAGE The events that follow injection are strictly dependent on a source of nutrients external to the cell, except that starved, infected cells tend to lose their potentiality to yield virus. Given adequate food and a favorable temperature (usually 30° to 37° C), the normal course of events leads to cellular lysis with the liberation of 20 to 2000 new viral particles per bacterium, the yield depending chiefly on nutrient conditions and the length of time (20 minutes to about 2 hours) during which cellular lysis can be delayed. Beginning with the injection, marked changes occur in the biosynthetic pattern of the cell. These changes will be described presently, but do not yet help to define vegetative phage, which A. D. HERSHEY is a genetic concept. This concept emerges from the following facts. Doermann (10) showed that infected cells broken open dur- ing the first 10 minutes following infection do not yield any infec- tive virus. This result has since been accounted for by the act of injection: what goes into the cell is not virus. Doermann's experiments went much further than this, however. He proved that genetic determinants, that is, enumerable structures possess- ing viral specificity, multiplied during the period in which the cell remained free of infective virus. This proof is summarized in a recent review (11). The term vegetative phage refers to these noninfective structures that multiply and produce new genetic combinations, and must be thought of as the connecting links between parent and offspring virus. The central problem of phage growth, therefore, is the problem of structure and func- tion of vegetative phage. MATURATION The process by which vegetative phage is converted into rest- ing phage is called maturation. From the end result we know that it involves the reformation of envelope and tail, but we do not know where it starts ; to answer this it is necessary to know what vegetative phage is like. It seems possible, as will be dis- cussed below, that vegetative phage may consist of replicas of the injected DNA-containing fibrils. If so, maturation calls for the complete synthesis of envelopes. Probable intermediate stages in maturation have been identi- fied. These consist of empty, tailless envelopes (40), accom- panied by detached tails, or of tailed, but probably DNA-less envelopes (46). They are found only 2 or 3 minutes before the phage particles of which they are the presumed precursors, and so are probably not themselves vegetative phage particles, which must be formed appreciably earlier. The absence of DNA is puzzling, and it seems preferable to assume that the observed structures lose their DNA during isolation, rather than to imagine that they receive their charge of DNA as a final act CHEMISTRY AND VIRAL GROWTH of maturation. The fact that nearly all the DNA in infected cells, excepting that contained in resting phage particles, is sensitive to deoxyribonuclease may be significant in this con- nection. It is perhaps not quite established that the DNA-less structures are intermediates at all. In view of these uncertain- ties, little more can be said about them at present. The time course of maturation is linear, beginning about 10 minutes after infection and continuing until the cells burst. During this time vegetative phage probably continues to multi- ply, as indicated by progressive increase in proportion of re- combinants (41), and continued synthesis of viral protein and DNA (46,58). Since maturation is irreversible (22), there is no need to dis- tinguish between mature intracellular virus and resting extra- cellular virus. The individual particles probably play a passive role, if any, in the release of virus from the cell. The Priming Substance We have seen that the interesting period in the life of a phage particle begins when its charge of DNA enters a sensitive bacterial cell to form vegetative phage. It is a question of considerable ideological importance (64) whether this charge is exclusively DNA or contains protein as well. Agreement about it has not yet been reached at the level of experimental fact (62) and, what is worse, it is doubtful whether direct analytical methods can answer it satisfactorily (23). I wish to make the point that the main biological implications of the injection phenomenon are largely independent of this specific question. Let us assume al- most the worst, namely, that the charge that enters the cell con- sists of nucleoprotein fibers and that these, furthermore, are functionless until they have made specific attachments to compli- cated structures in the bacterium. What remains of our repro- ductive cycle that is biologically unique? In my opinion three very important features. First, these hypothetical fibers would have to carry all the intelligence that A. D. HERSHEY T2 has acquired during its long evolutionary history (excepting what it has delegated to the bacterium). In a sense this is the kind of demonstration that has been the goal of experimental genetics since its beginning, and one that remains a will-o'-the- wisp (16,55) if it is not provided by T2. Second, these fibers must be linear molecules, or very nearly, in which respect they meet the theoretical requirements of a genetic material (68), as the visible chromosomes of cells do not. Third, they can be observed to multiply in a cell that is phylogenetically remote from their proper origin, as the chromosomes of cells cannot. The experimental meaning of this feature is brought out by the fact that both nucleic acids and proteins of virus and host are distinguishable by qualitative analytical methods. In this last respect, the uniqueness is not a matter of opinion. Needless to say, the blendor experiment alone does not quite establish these claims (23). A genetic function of the nonstrip- pable tip of the tail has first to be excluded. In itself this may be a trivial point ; it is not likely that even the staunchest biological holist would insist that the fertilized egg contain a representative molecule of every specific substance the organism is capable of producing. The question becomes important in connection with the thesis that viral lineage (defined somewhat abstractly in terms of viral properties that are invariant with respect to varia- tions in the host) is determined exclusively by a structurally homogeneous class of linearly differentiated molecules. It is interesting also because it can be scrutinized by both genetic and chemical methods. Both tend to exclude the tail-tip as the primordium from which new membrane protein comes. I shall give an example of the genetic evidence first. The genetic control of the specificity of attachment of virus to bacterium, which means control of the chemical structure of the tail protein, has been studied in a particularly instructive way by several investigators, most thoroughly by Streisinger (59). T2 and T4 are two closely related viruses differing, among other ways, in their tail proteins. Genetic experiments show that this difference is determined by a single gene. We may ask CHEMISTRY AND VIRAL GROWTH whetlier the determinant of this character is the organ of at- tachment itself or a different organ, that is, whether the gene and the agent of its expression are the same or different sub- stances. The following circumstances show that they are difTerent. A single bacterium infected with both T2 and T4 yields a mixed viral progeny among which the individual particles can be classified in two ways. First, one can determine whether their attachment to bacteria shows the specificity of T2 or the spec- ificity of T4. This test shows that some particles resemble T2 and some T4. Second, one can classify the particles in terms of the progenies they yield when they multiply individually. By this test, too, some prove to resemble T2 and some T4. The remarkable thing about the two tests is that they do not agree: many particles adsorb like T2 and yield progenies like T4. The best interpretation of this result is that, owing to the special conditions prevailing in the mixedly infected bacterium, some of the particles receive tail protein manufactured for a T2 particle, together with a tail-protein-determining gene derived from the T4 lineage, and vice versa. If so the two are different struc- tures. The genetic results just described show that tail speci- ficity, as such, is not conserved during reproduction. Analogous radiochemical results show that tail substance is not conserved during reproduction. Evidently tail protein is not the seed from which new tail protein comes. These two results seem to show that the injected materials direct the complete resynthesis of tail protein. I have cited one item of a considerable body of genetic in- formation (24) leading to the conclusion that the genetic mate- rial of T2 consists of linear structures. All the chemical evidence implicates DNA as the chief constituent of these structures. If one wishes to assume that DNA is the prime hereditary material, justification can be borrowed from the beautiful work of the past decade with bacterial transforming systems (31), or it can be sought directly, as will be discussed below. 7 ..;/--•: .- A. D. HERSHEY Metabolic Effects of Infection Soon after infection, bacteria stop making respiratory and other enzymes (9,51) and fail to respond to inductors of adaptive enzymes (49), as if the metabolic equipment of the cell were frozen at the time of infection. Protein synthesis as a whole continues unabated, however. By contrast, the synthesis of bacterial RNA and DNA stops abruptly, being replaced by the synthesis of viral DNA (6). The latter point has been con- firmed by transferring infected cells into C^'^-glucose, when it is found that no G^^ enters DNA-cytosine (29). The bacterial DNA that was formed before infection disappears afterward, in contrast to bacterial RNA and protein which remain com- paratively inert. Cytological changes suggest that the bacterial nuclei are quickly dispersed (44) . These facts have led to the following generalizations. (7) Infection causes a shift from the synthesis of characteristic bacterial constituents to the synthesis of characteristic viral con- stituents, without major substitutions in enzymatic equipment (9). (2) Viral genes replace bacterial genes: infection is parasitism at the genetic level (44). For the present these two ideas are no more than colorful, rather clouded, state- ments of fact but, as Luria (44) has pointed out, it may be useful to look for connections between them. Structure of Vegetative Phage I have summarized reasons for believing that the sub- stance derived from a single viral particle and directly initiating viral growth consists of one or more linear molecules. If this is so we want to know their number and function, and whether they multiply before or after forming more complex struc- tures. Structure can be got at in several ways besides the attempt to isolate vegetative phage, and some of these are surveyed below. About function only one question can be asked in advance of information about structure. It is concerned with 8 CHEMISTRY AND VIRAL GROWTH the conservation of materials during multiplication, which in turn leads back to questions about structure and function. THE NUMBER OF LINEAR MOLECULES The number of structures injected into the bacterium is not known beyond the fact that one phage particle contains about 2 X 10~^° 7 of DNA, which corresponds to about 20 molecules in the isolated form (19). Presumably the number could be determined either by physical or genetic methods. The follow- ing genetic experiment illustrates a principle of wide application to questions of this kind. T2 contains at least three regions of genetic material that assort independently during genetic recombination (24). If a bacterial cell is infected with two phage particles genetically marked in one of these regions, and if the infections are spaced by an interval of 2 minutes or more, the second particle will generally not contribute its genetic marker to the progeny (15). At least some of the DNA of the second particle enters the cell, because about half of the DNA of the superinfecting particles is quickly split into acid-soluble materials (38). The mechanism of exclusion is otherwise unknown, but one can ask whether the unit of exclusion is the genetically intact phage particle, or something smaller. To answer this, one infects bacteria in succession with two phage particles marked in two of the inde- pendently assorting regions of genetic material, and examines yields from single bacteria to see whether one of the two markers can contribute while the other is excluded. A single test of this kind (26) showed that the two markers were always excluded together. For what it is worth, this result suggests that the genetic unit called vegetative phage (or its precursor) is also a structural unit. PHYSICAL STRUCTURE The composition of vegetative phage is difficult to investi- gate, first because there is no unambiguous way to identify interesting structures if they could be isolated ; second because A. D. HERSHEY any method used to break open the infected cell might alter im- portant structural relations. Direct microscopy of infected cells (50) has not revealed any characteristic intracellular structures that might be vegetative phage particles. Similarly, examination of extracts of infected bacteria (40) brought to light only normal cell components, resting phage particles, and empty, tailless membranes that have been interpreted as early products of the maturation cycle. Watanabe, Stent, and Schachman (63) labeled viral precursor DNA by infecting cells with P^^-containing phage, and then sub- jected extracts prepared at various times to centrifugal analysis. Citrate was used to inhibit bacterial deoxyribonculease, but otherwise the conditions of lysis may have been favorable for enzymatic degradation. They found that most of the viral precursor DNA in the lysates sedimented like free nucleate. None of these results either contradicts or justifies the as- sumption that vegetative T2 consists of free molecules of DNA. VIRAL PRECURSOR DNA Early tracer experiments showed that the phosphorus used to make viral progeny comes from three distinct sources: materials assimilated by the bacterium before infection (8), materials assimilated after infection (8), and parental materials (53). Weed and Cohen (66), Stent and Maal0e (58), and French et al. (18) found that atoms derived from any of these three sources entered unequally into the viral progeny formed at successive times, suggesting the existence of a precursor pool containing a limited amount of phosphorus. These facts prompted a search for viral precursor DNA, which was greatly facilitated by the interim discovery that the DNA of T2 contains the distinctive constituent 5-hydroxymethyl cytosine (69). This search brought to light the following information. Cytosineless DNA, that is, DNA having the composition of the DNA of viral particles, begins to form in infected bacteria promptly after infection, and already measures roughly 50 phage 10 CHEMISTRY AND VIRAL GROWTH equivalents per bacterium 10 minutes after infection, at which time infective virus particles begin to form. Also at later times, infected cultures contain more cytosineless DNA than can be ac- counted for by infective particles, and the amount of surplus DNA remains approximately constant at 50 to 100 phage equivalents per bacterium (28). Tracer experiments (22) show that this surplus DNA is the principal immediate precursor of the particles. First, because phosphorus incorporated early into the surplus DNA disappears from it later on, as if it were being transferred to infective viral particles by an efficient, irreversible process. Second, because the kinetics of the transfer, whatever the source of labeled phosphorus, calls for a precursor pool con- taining 50 to 100 phage equivalents of phosphorus per bacterium, in agreement with direct measurements of the amount of surplus DNA. This agreement shows that the precursor pool is sampled more or less at random when a phage particle is formed. In this sense it must contain chiefly a single precursor, as opposed to a sequential series of precursors. This important distinction, based on analytical methods admittedly not very exact, is re- called below by the term unitary pool. IDENTITY OF PRECURSOR DNA AND VEGETATIVE PHAGE The idea of vegetativ^e phage is based on genetic experiments pointing to the existence of a mating pool or, more generally, a genetic precursor pool. The chemical experiments reveal a pool of viral precursor DNA. These two pools can be com- pared with respect to unity, size, and time of formation, and should resemble each other in all these respects if vegetative phage is or contains the viral precursor DNA. Strictly speaking, the pool of precursor DNA cannot be a unitary pool, because at intermediate stages during maturation, any DNA contained in the immature particles would belong neither functionally to a randomly sampled pool, nor analyti- cally to mature phage particles. The effect of this complication would be to cause the pool of precursor phosphorus, assayed 11 A. D. HERSHEY kinetically, to be smaller than the pool of precursor DNA meas- ured directly. The fact that no such discrepancy is found means that the time precursor DNA spends in the maturation cycle is short compared to the washout time of the pool (about 8 minutes). However, since the methods are far from precise, and viral growth in different cells is not synchronized, only ex- treme alternatives can be excluded; for example, linear multi- plication such that each offspring particle enters its maturation cycle directly at birth. To this extent the chemical findings suggest a geometric mechanism of synthesis of DNA. More to the point, however, is the likelihood that the amount of precursor DNA determined analytically should exceed appreciably the amount contained in the genetically defined vegetative struc- tures. The chemical facts show that the infected cell contains 50 to 100 phage equivalents of viral precursor DNA, much of which belongs to a unitary pool in the sense that it is sampled at random for the maturation of infective particles. This pool is largely filled 10 minutes after infection, at the time maturation begins. What are the characteristics of the genetic pool? Luria's (43) analysis of viral mutation showed that genetic deter- minants increase geometrically; this is probably equivalent to saying that they share a pool from which samples are drawn at random during maturation. This was shown more directly by Visconti and Garen (61), who found that genetic markers con- tributed by superinfecting phage, entering the bacterium 7 or 8 minutes after primary infection, were sampled from the same pool with markers derived from the primary infection. More- over, the kinetics of genetic recombination suggest that the mating pool has already reached its maximal size, estimated at 30 vegetative particles per bacterium, at the time maturation begins (41). Thus the genetic pool and the viral precursor DNA pool are similar with respect to unity, size, and time of formation. It is a reasonable though not quite necessary inference that the precursor DNA is contained in the genetic pool. 12 CHEMISTRY AND VIRAL GROWTH VIRAL PRECURSOR PROTEIN Cohen (7) found that there was no interruption of protein synthesis at the time of infection, and that protein continued to accumulate until viral growth ceased. His findings have been confirmed by measuring the assimilation of S^^ into acid-in- soluble materials after infection (29). These measurements show that bacteria synthesize protein at nearly identical rates before, during, and for some time after infection. When does the synthesis of viral protein start? This question has been attacked in two ways. Luria (44) and his collaborators studied the formation of viral antigens in infected cells. Their results led to the conclusion that viral antigens are formed relatively late during the process of viral growth, as though they were products of the maturation cycle. If this is so, the protein synthesized immediately after infection is not virus specific. Hershey et al. (29) analyzed viral precursor protein by tracer methods. They fed S^^ to infected bacteria for intervals of 5 minutes, and measured the amount of S^^ subsequently incorporated into virus and total intrabacterial protein, re- spectively. The amount incorporated into protein of all kinds was virtually independent of the period of assimilation tested, but the proportion of this incorporated into virus varied greatly. For the period to 5 minutes after infection, only 13 per cent went into virus; for 5 to 10 minutes, 25 per cent; for later times, 50 to 60 per cent. This means that infected bacteria synthesize two classes of protein, one viral precursor and one not, and that the maximal rate of precursor protein synthesis is not reached until shortly before the beginning of maturation (15 minutes after infection under the conditions of these experiments). Kinetic analysis of sulfur assimilation during the period in which virus was accumulating at a linear rate showed that the interval between assimilation of sulfur atoms and their incorporation into unspecified protein averaged about 2 minutes. The interval between assimilation and incorporation into mature virus aver- aged about 10 minutes. Hence labeled viral precursor protein 13 A. D. HERSHEY persists in the infected cell for an average of 8 minutes. Labeled viral precursor DNA, under the same conditions, persists about 14 minutes. This difference seems to show that the cell con- tains more precursor DNA than precursor protein, and therefore that the DNA destined for a given phage particle is formed some- what earlier than the protein destined for that particle. Both the serological and tracer methods are consistent with the idea that protein synthesis is a terminal phase in the forma- tion of the phage particle, but neither has yielded satisfactory proof of this idea. A more promising approach might be to look for conditions under which maturation is inhibited while DNA synthesis proceeds, or conditions permitting DNA syn- thesis but not protein synthesis. Cultures containing proflavine furnish an example of the first class. This substance appears to block only a late step in maturation and permits both protein and DNA synthesis (44). One inhibitor of protein synthesis has been tested. Cohen (7) finds that 5-methyl tryptophan blocks both protein and DNA synthesis in infected bacteria. This suggests either that vegetative phage contains protein or that DNA synthesis is dependent on the synthesis of protein for other reasons. The attempt to confirm or refute this conclusion by studying the effects of specific metabolic blockade seems at present to offer the most general method of defining the com- position of vegetative phage. RNA ECONOMY IN INFECTED BACTERIA Cohen (8) showed that the amount of RNA in infected bacteria remains constant from the moment of infection, and that not more than 2 to 9 per cent of its phosphorus is replaced by newly assimilated phosphorus during 60 minutes of viral growth. Manson (48) confirmed the latter result by a more rigorous method ; in his experiments replacement up to 5 per cent of the total RNA could not be excluded because of the presence of uninfected bacteria in the cultures. In order to see what these results mean it is necessary to make some quantitative com- parisons. 14 CHEMISTRY AND VIRAL GROWTH The amount of DNA in an uninfected bacterium growing in glucose-ammonia medium averages about 40 phage equivalents (8 X 10~^ 7). After infection, viral precursor DNA is synthe- sized at the rate of about three phage equivalents per bacterium per minute and accumulates to roughly 40 equivalents per bacterium. The amount of bacterial phosphorus (assimilated before infection) that is used to make viral DNA measures about 40 phage equivalents. The total amount of preassimilated RNA phosphorus per bacterium is nearly 400 phage equivalents. If 5 per cent of the total RNA were undergoing moderately rapid turnover, E.NA synthesis could easily keep pace with DNA synthesis, without having been detected in the experiments cited above. It has been suggested that this happens (22). If 10 per cent of the total preassimilated RNA were con- verted into viral DNA, this source would account for an ap- preciable part of the observed use of preassimilated materials by the virus, and would not readily be detected as a significant decrease in RNA content of the culture. As a matter of fact, one does observe a significant decrease in acid-insoluble RNA when measured in terms of preassimilated isotope, and indirect evidence suggests that some of the purine and pyrimidine carbon enters DNA (29). These remarks are intended to show that an active role of RNA in the growth of T2 has not been entirely excluded. Since the T2-infected bacterium is the only known biological system in which synthesis of RNA during growth may not occur, more penetrating experiments designed to test this possibility are called for. MATERIALS CONSERVED DURING REPRODUCTION A special method of defining the composition of vegetative phage — perhaps a minimum composition, perhaps an irrelevant one — consists in tracing those structures that pass intact from parental to offspring phage. It is now generally agreed that only the constituents of the parental DNA are transferred (17, 15 A. D. HERSHEY 27,35). It is also agreed that the efficiency of transfer never exceeds 40 or 50 per cent (18,22,65). The mechanism of transfer, and therefore its significance, remains undecided. The question of mechanism is conveniently discussed in terms of alternative explanations for the low efficiency of transfer. 7. The low efficiency of transfer may result from losses occurring in some but not all the infected bacteria, either be- cause preparations of phage always contain inviable particles or because for other reasons some of the bacteria yield few or no viral progeny. Although losses from both causes undoubtedly occur and cannot at present be measured satisfactorily, most observers have considered this explanation inadequate. Losses of this type, of course, have nothing to do with the mechanism of transfer. 2. The loss may be an essential feature of viral growth, but occur before multiplication starts. This would imply that about half the parental DNA goes into vegetative phage, and the other half serves a different, presumably nongenetic, function. This possibility has been tested in two ways. Maal0e and Wat- son (47) measured the efficiency of transfer of P^^ during two successive cycles of growth, and found only the usual transfer of 40 per cent during the second cycle. This showed that the transferred atoms from the parental DNA are incorporated into both transferred and nontransferred parts of the DNA of the progeny. Hershey et al. (29) found that the four bases of the DNA of C^^-labeled T2 are transferred with equal efficiency. These two results show that the loss is random, that is, if the parental DNA splits into two parts that perform different func- tions, and if only one part is conserved among the progeny, the choice is probably made between identical parts. In this form the idea of functional differentiation within the viral DNA is unattractive but cannot be considered disproved. 3. All the parental DNA may enter vegetative phage where it is subject to a succession of small losses during replica- tion. The losses would have to amount to 5 or 10 per cent per generation to account for an observed transfer of 50 per cent 16 CHEMISTRY AND VIRAL GROWTH Losses of this magnitude might well be expected on general grounds. An attempt was made to test this idea by feeding P^^ to infected cells during the first 4 minutes after infection (22). It was found that the labeled DNA content of the infected cells rose to a maximum during the first 25 minutes, and that 70 to 90 per cent of this was eventually incorporated into virus. This high efficiency fails to exclude the hypothesis under consideration because of the slow entry of P^^ into viral precursor DNA. It does show, however, that maturation is not the step that limits the efficiency of transfer from parents to offspring. 4. Finally, perhaps only a small part or none of the parental DNA goes into vegetative phage directly. Half of it, after playing some unspecified role, could then be broken down and fed into the general pool of DNA precursors. This idea was at first supported by Kozloff's finding that parental DNA phosphorus is transferred more efficiently than parental DNA nitrogen (34,35). However, subsequent and technically su- perior experiments showed equal transfer of phosphorus and purine carbon (65), and equal transfer of the four bases (29). Moreover, the intermediates must be nucleotides or larger frag- ments, because free bases or nucleosides, which compete effec- tively with CO2 (33) or glucose (20) as a source of viral DNA carbon, fail to compete during the transfer from C^Mabeled virus (29). In view of the seeming contradictions, Kozloff"'s result ought to be reinvestigated by the isolation of doubly labeled nucleotides. In the meantime, the bulk of evidence is opposed to, but does not disprove, the idea of indirect use of parental materials. At the moment, enumeration of these alternatives (the list is not exhaustive) is of value chiefly to show that the relatively low efficiency of transfer does not permit any conclusions about the mechanism of transfer. In addition, it may be pointed out that the transfer of purine and pyrimidine carbon (except cyto- sine) from bacterial DNA to viral DNA is nearly or quite per- fectly efficient (29). Since this may surely be taken as an ex- ample of "indirect" transfer, the assumption that the transfer 17 A. D. HERSHEY from parents to progeny involves breakdown and resynthesis of DNA leaves the low efficiency of the process unexplained. All the evidence short of isolation and identification leads to the conclusion that vegetative phage contains large amounts of DNA. The possibility that DNA is its principal functional component is suggested by the analysis of resting phage particles, by examination of the injection mechanism, and by the com- position of the material conserved during viral growth. A more general confirmation of this idea has not yet proved possible but promises to emerge from considerations to which we now turn. CORRELATION OF MATERIAL AND GENETIC CONTINUITY A direct correlation between the transfer of genetic markers and of labeled DNA from parental to offspring virus would not only answer the question about biochemical pathways but also rule out the unpleasant possibility that most of the viral DNA resembles more closely in function the white of an egg than it does the nuclear apparatus of an ovum. Such a demonstration would, in fact, reduce genetic questions about T2 to purely bio- chemical questions about structure and function of DNA. Koz- loff (34) recognized this very early but was unable to find any correlation between genetic and biochemical results. Kozloff"'s basic experiment is the following. Bacteria were simultaneously infected with isotopically labeled phage, pre- viously exposed to ultraviolet light or x-rays, and with un- labeled, unirradiated phage. Previous experiments of this type with genetically marked phage had shown that the genetic contribution from the irradiated phage to the mixed yield of virus could be suppressed by a sufficient dose of radiation. Kozloff reasoned that the contribution of isotope ought also to be suppressed if the material transfer had any direct connection with genetic function. Since he did not find any appreciable effect of irradiation on isotope transfer, Kozloff' (34,35) concluded that the material transfer from parents to progeny probably had nothing to do with genetic function, and that it might very well involve breakdown to nonspecific fragments en route. Watson 18 CHEMISTRY AND VIRAL GROWTH and Maal0e (65) and French et al. (18) described similar results without, however, subscribing to KozlofF's conclusion. Subsequent experiments (29) have shown that the earlier results can be questioned on strictly technical grounds. For this purpose it is necessary to distinguish between the effects of ultraviolet light and ionizing radiations. Phage inactivated by ionizing radiations are found to be largely incapable of injecting their DNA into bacterial cells, although their ability to attach to the cells is not affected. Following mixed infection with irradiated and unirradiated virus, the viral yield after cellular lysis is heavily contaminated with the original particles of irradiated virus. For this reason it is not possible to measure isotopic contribution from the ir- radiated virus to the progeny of the mixed infection (29). The early experiments with phage inactivated by ultra- violet light are questionable for two reasons. First, the genetic potency of ultraviolet-killed phage in mixed infections is only now being investigated in a quantitative fashion (12) and proves to be much greater than previously supposed. Second, the isotopic contribution is not independent of the radiation dosage, as Kozloff believed, but falls slowly and continuously with in- creasing doses (29). This effect cannot be attributed solely to loss of the ability to inject ; the latter property is extremely re- sistant to ultraviolet light. The careful experiments that will be required to assess the significance of the correlation between the behavior of genetic and isotopic tracers remain to be done, but it is clear that a correlation exists. A very clear qualitative correlation can be demonstrated for the following special situation. As previously mentioned, phage particles attaching to bacteria that have already been infected 2 minutes or so earlier fail to contribute genetic markers to the progeny, and half the DNA of the superinfecting particles is quickly split into acid-soluble material. At first it was thought that the chemical breakdown might be the cause of the genetic exclusion. However, French et al. (18) found that no chemical breakdown occurs when the bacterial deoxyribonuclease is 19 A. D. HERSHEY inhibited by streptomycin, and that even under these conditions there is no transfer of isotope from superinfecting phage to the offspring of the primary infection. We have recently studied superinfection a Httle further, in- hibiting bacterial deoxyribonuclease when desired by reducing the concentration of magnesium in the cultures to 10~^ M (29). At this low magnesium concentration, injection and growth of the primary infecting phage, and the transfer of its phosphorus to viral offspring, are normal. Independently of magnesium concentration, superinfecting phage injects only half its DNA (or half the particles inject), and both genetic and isotopic markers derived from it are excluded from the viral yield. The half that is injected may or may not be broken down, depending on the magnesium concentration. When the bacterial de- oxyribonuclease is inhibited, superinfecting phage is excluded from genetic participation in growth and half its DNA enters the cells and remains intact without metabolic participation in viral growth. Unfortunately, the significance of this parallel is doubtful because the mechanism of exclusion is unknown. RADIOGENETIG STRUCTURE ANALYSIS Viral radiogenetics began some years ago when Luria (42) proposed that phage particles inactivated by ultraviolet light could be revived by a process of genetic substitution. His idea was appealing, first, because it promised a test of the much older idea that radiations produce localized genetic damages to biologi- cal materials and, second, because it led to rather special as- sumptions about the mechanism of viral growth. His idea sub- sequently lost favor without really being disproved, partly be- cause Dulbecco (13) showed that the inactive particles could also be revived by something resembling repair, partly because the quantitative predictions of the substitution hypothesis failed at high radiation doses (14), partly because the early radiogenetic experiments suffered from what is best described as lack of faith. Stent (57) and Doermann (12) have recently revived the 20 CHEMISTRY AND VIRAL GROWTH idea of reactivation by genetic substitution. Their experiments are of tlie following type. Bacteria are infected with two kinds of phage differing by several genetic markers, one kind carrying radiation damage and one not. In Stent's experiments, the damages result from decay of P^^ incorporated into the virus during prior growth. In Doermann's experiments they are produced by irradiating phage with ultraviolet light. In both instances the damage can be ascribed plausibly to localized effects on the viral DNA, and both types of damage show the same behavior in radiogenetic experiments. The following description refers specifically to Doermann's experiments. He uses T4 particles irradiated with ultraviolet light until they are unable individually to infect a bacterium in the usual way. Such particles may be called dead, and the radiochemical process producing them may be called primary killing. The dead particles can be revived in several ways. In what follows we are concerned with only one of them, called cross-reactivation. It shows the following characteristics. 7. Yields from individual bacteria infected with one or more live plus one dead phage particle frequently show some but not others of the genetic markers introduced with the dead particle. The response of the individual markers to varying radiation dosage corresponds to a target volume that is 4 per cent of the target volume for primary killing. 2. Markers known from genetic tests to be unlinked are in- activated independently of each other. 3. For moderate radiation dosages, markers derived from the irradiated phage particles are either absent entirely, or appear in numerous copies in yields from individual bacteria. 4. Inactivation of genetically linked markers occurs in a correlated manner. Doermann interprets these facts in the following way. Most of the radiation damage results from localized photo- chemical reactions in genetic material; otherwise correlated inactivation of unlinked markers would be observed. Un- damaged pieces of genetic material are rescued by recombina- 21 A. D. HER.SHEY tion away from damaged pieces, since both the rescue and au- thentic recombination are subject to the same Hnkage rules. The photosensitive target measured in these experiments is the average size of pieces that can be rescued by recombination. It measures one twenty-fifth of the total genetic material and is large compared to the size of the individual markers, since linked markers tend to be rescued together. Stent's conclusions are consistent with these and lead further in one direction. Since the primary lethal damage produced by assimilated P^^ results from one out of twelve atomic disintegra- tions (30), at least this fraction of the DNA must be associated with genetic material. The fraction must, in fact, be larger, because the radiochemical efficiency is dependent on tempera- ture (56). These methods are evidently capable of yielding rather pre- cise descriptions of genetic material, possibly in physical terms, certainly in radiochemical terms that can be compared with genetic descriptions. Moreover, like the earlier results of Luria, they call for interesting assumptions about the mechanism of viral growth. The problem is to explain how rescue by re- combination is achieved without greatly setting back the multi- plication of the rescued piece relative to comparable genetic material that does not require rescue. Such a setback does, in fact, appear when the rescue is made more difficult by high radiation dosages. In this situation we come face to face with the problem of structure and function of vegetative phage. Since both the facts and ideas bearing on the interpretation of the radiogenetic experiments are changing rapidly, it would be rash to predict how they are to be reconciled with each other. Relation between Virus and Cell Nucleus There are a number of indications from other phage- bacterium systems that some bacteriophages engage directly with components of the bacterial nucleus (5,29,37,45,70). These are only beginning to be worked out and cannot be dis- 22 CHEMISTRY AND VIRAL GROWTH cussed here. For T2 none of the biological tests of this idea are applicable, but chemical tests are. As already mentioned, the first cytochemical effect of the infection is a rapid dispersal of the bacterial chromatin (44). By chemical analysis, one observes a more or less complete dis- appearance of cytosine-containing DNA, and the atoms of this DNA are rapidly incorporated into viral DNA. The conver- sion appears to be highly efficient. The direct analytical re- sults indicate a phosphorus transfer of 50 per cent (22,54), sub- ject to the assumption that all the transferred phosphorus comes from bacterial DNA. This becomes nearly 100 per cent when corrected for the fact that only half the phosphorus of the bac- terial DNA fraction, but nearly all the phosphorus in isolated phage, is really DNA phosphorus (28). Similar conclusions follow when the transfer of C^ ^-labeled bacterial precursors is measured. All the DNA purine and pyrimidine carbon (ex- cept cytosine), and all or most of the carbon of specifically labeled bacterial DNA-thymine, appears either in viral DNA or in residual bacterial DNA in infected bacteria (29). The con- version is more or less complete, and occupies the first 30 minutes of viral growth. One would like to interpret these facts as an illustration of Luria's idea of parasitism at the genetic level. Before doing so, two questions have to be answered. First, does the virus cause the breakdown of bacterial DNA, or merely block its resyn- thesis? Second, is bacterial DNA the only characteristic bac- terial substance that is used to make virus? The first question has been answered by showing that bacterial DNA, and indeed characteristic bacterial substances in general, do not turn over at rates comparable to rates of syn- thesis in growing bacteria (25). Moreover, bacterial RNA does not turn over appreciably in infected bacteria (8,22,48). State- ments made about turnover are, of course, intelligible only in terms of actual experiments. Two examples will suffice here. The presence of thymidine in unlabeled culture micdium during viral growth will specifically suppress the conversion of labeled 23 A. D. HERSHEY bacterial DNA- thymine into viral DNA-thymine (29). The presence of thymidine in unlabeled culture medium during bacterial growth will not suppress the conservation of labeled bacterial DNA-thymine (25). In fact, the amounts of radio- carbon in all the DNA-bases remain constant during 6 hours of growth at one generation per hour in media containing any of a number of competitive substrates. One concludes that infection stimulates a decomposition of bacterial DNA that is different in rate or kind from any that may occur during bacterial growth. It may be added that the decomposition in infected bacteria is not prevented at concentrations of magnesium too low to permit the action of intracellular deoxyribonuclease as tested in another way (29), so that the effect may not be due merely to the activa- tion of this enzyme (35). Bacterial DNA is not the only source of preassimilated material available for the synthesis of viral substance. There is another source of purines and pyrimidines, probably RNA (29). There is also a small amount of preassimilated sulfur, which may or may not be derived from protein, that can be used to make viral protein (29). However, these materials are used at rates altogether negligible compared to the rate of conversion of bacterial to viral DNA. It is reasonable to conclude that the preferential breakdown and re-use of bacterial DNA indicates some close relationship, structural or spatial or both, between the two kinds of DNA in infected bacteria. T2 and Other Organisms At the present time, if one wished to invent a genetic mate- rial, one would almost certainly choose a DNA constructed along the lines proposed by Watson and Crick (64). A few organisms have actually chosen DNA, the evidence being very good for several bacteria (31), and what I have related above for T2. These facts immediately raise two questions. The first is 24 CHEMISTRY AND VIRAL GROWTH whether all organisms have chosen DNA for a genetic material, which might imply that the choice had been made only once. At the present time this seems unlikely, because a number of plant viruses probably lack DNA. Evidently one of the tasks of the plant virologists is to make very sure of this. The second question is the following. In an organism that does make use of DNA, is DNA the sole agent of genetic con- tinuity, or is genetic specificity passed from substance to sub- stance like the token in a relay race? The answer to this ques- tion can only be guessed, but one can hope to get it from T2, as I have tried to show. More generally, one wonders what connection there can be between the linear molecules that pass from pneumococcus to pneumococcus, or from T2 to its host, and the relatively enor- mous chromosomes of most cells. A similar question puzzled geneticists, of course, long before anything was known about inheritance in bacteria or viruses (68). I think it is doubtful whether T2 can throw any light on this question except, perhaps, by renewing interest in it. More specifically, what connection can there be between genetic recombination in T2 and reciprocal crossing-over be- tween chromosomes? Here the answer may be none (60). Not only because the discrepancy in size forbids analogy; also because recombination in T2 does not seem to be reciprocal (39). One suspects that in T2 the mechanical and biochemical bases of inheritance are reduced to their simplest terms; indeed, this is what one hopes. If this proves to be true, it will be unfair to complain that information about this organism cannot be applied directly to more complicated ones. Conclusion In studying viral growth, one necessarily studies many biochemical problems simultaneously. The main ones involve interrelationships among deoxyribonucleic acids, ribonucleic 25 A. D. HERSHEY acids, and proteins, during the synthesis of at least two of these classes of substance. But to state them in this way is to ignore the unique problems presented by T2. These depend on the fact that the material thread connecting parental and offspring virus seems to be an analytically recognizable deoxyribonucleic acid and nothing else. 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Visconti, N., and A. Garen, Proc. Natl. Acad. Sci. U. S., 39, 620 (1953). 62. Volkin, E., Federation Proc, 7J, 315 (1954). 63. Watanabe, I., G. S. Stent, and H. K. Schachman, Biochim. et Biophys. ^fto, 75, 38(1954). 64. Watson, J., and F. H. C. Crick, Nature, 777, 111 (1953). 65. Watson, J., and O. Maaljzie, Biochim. et Biophys. Acta, 70, 432 (1953). 66. Weed, L. L., and S. S. Cohen, J. Biol. Ch.m., 792, 693 (1951). 67. Williams, R. C, Cold Spring Harbor Symposia Quant. Biol., 78, 185 (1953). 68. Wright, S., Physiol. Revs., 27, 487 (1941). 69. Wyatt, G. R., and S. S. Cohen, Biochem. J. (London), 55, llA (1953). 70. Zinder, N., Cold Spring Harbor Symposia Quant. Biol, 78, 261 (1953). 28 PHOTOSYNTHESIS* J. A. BASSHAM and M. CALVIN, Radiation Laboratory and Department of Chemistry, University of California, Berkeley, California During the past decade, considerable advance in the under- standing of the complex process of photosynthesis has been realized. This achievement has resulted both from the use of new methods of investigation and from the stimulation of interest, partly as a result of these new techniques, which has led to very widespread participation in the study of this problem throughout the scientific world. Fortunately, compilation and discussion of this immense amount of work (17,26,27,34,46,47,65) — together with review articles of the most recent work (30,36,41) — have generally kept pace with the work itself. In the present instance, therefore, no responsibility for a complete inclusion of published work will be assumed, but rather, an attempt will be made to present some current opinions regarding selected aspects of photosynthesis, together with some speculations in areas that may be expected to prove fruitful in the near future. From the discoveries of recent years, it has become in- creasingly apparent that photosynthesis includes a number of cyclic processes which are coupled to one another in such a way * The preparation of this paper and the original work described were sponsored by the U. S. Atomic Energy Commission. 29 J. A. BASSHAM AND M. CALVIN that there is a continuous flow of energy from one cycle to another resulting in the conversion of light energy into the potential energy of new chemical bonds. These cyclic processes, although similar to better known cyclic processes occurring during respiration in plants and animals, do not seem to be in any instance simple reversals of respiratory cycles but do appear to have many points of contact with respiratory reactions, including common intermediates and enzymes. These points of contact may well lead to interaction between the two processes which could alter the course of each (18). It appears that the organiza- tion of the green plant, both structural and enzymatic, may provide mechanisms for partially preventing such interactions where they would prove deleterious to the efficiency of the photosynthetic reaction, and possibly for permitting or even inducinsT them where interaction is beneficial. ^& Function of the Chloroplast One such device for isolating photosynthesis from respiration is the chloroplast itself. It appears likely that the entire reaction of photosynthesis, from the absorption of light, carbon dioxide, and water to the formation of various end products, may occur in the chloroplasts. This fact was indicated long ago by the observed formation of starch granules in chloroplasts. (However, starch and other high molecular weight compounds are also formed outside the chloroplasts from simple sugars, amino acids, and other low molecular weight compounds which diffuse out of the chloroplast.) It has long been known that isolated chloro- plasts can, under suitable conditions, retain the ability to evolve oxygen at rates comparable to those of photosynthesis, and at the same time, transfer reducing power to a suitable oxidizing agent. Efforts to demonstrate CO2 reduction with isolated chloroplasts were generally unsuccessful in the past. However, Gerretsen (32) found a decrease in the oxidation-reduction potential in illuminated chloroplast suspensions when they were supplied with carbon dioxide and concluded that there might be an uptake 30 PHOTOSYNTHESIS of carbon dioxide, though to only about 3% of the rate of photo- synthesis. Boychenko and Baranov (7) have demonstrated the incorporation of carbon dioxide into reduced organic compounds by isolated chloroplasts under illumination. This incorporation was determined through use of carbon-fourteen labeled CO2, providing a very sensitive method for detecting reduced carbon. This result recently has been confirmed by Arnon et al. (2). The rate of carbon reduction compared with the rate of carbon reduction in a corresponding amount of photosynthesis in intact leaves was not more than 0.5%, and many of the intermediates of the carbon reduction cycle have not yet been found. In any event, if it turns out that the rate is small compared with photo- synthesis and that only some steps involved in the complete cyclic reduction during photosynthesis are present in the isolated chloroplasts, these facts may be taken merely as an indication that some of the factors involved in the rather complex reduction cycle have been lost from the chloroplasts during their isolation, or that only limited amounts of the necessary enzymes are carried down with them. We could think of the chloroplast as a container of a complex arrangement of enzymes and cofactors, some of which are lost when the chloroplast is removed from the cytoplasmic environ- ment of the cell. Possibly such loss could be prevented if the chloroplasts could be preserved throughout their isolation in a solution exactly duplicating that contained in the cell. Perhaps it would be worth while to prepare such a solution by disrupting cells and removing chloroplasts and cell-wall fragments by centrifugation. This solution could then be used during the preparation of chloroplasts from fresh cells. The difference in susceptibility to inactivation during chloro- plast isolation displayed by the carbon-reducing apparatus as compared to that found with the system for the photolysis of water can be considered as a difference in susceptibility to loss of factors or to the disruption of the organization of various systems. It appears that the enzymatic apparatus for the absorption of light, the conversion of light energy to chemical energy, the decom- 31 J. A. BASSHAM AND M. CALVIN position of water by this energy, and the formation of oxygen and reducing power are all rather resistant to inactivation, provided relatively simple buffer solutions are employed in the isolation of the chloroplasts. This seems to indicate the presence of an organized enzymatic apparatus, perhaps with microscopi- cally large and intricate structure and with all necessary cofactors and prosthetic groups firmly attached. Such a view is con- sistent with the apparent structure of the grana and lamellae as revealed by electron microscope studies (40,57). The carbon reduction cycle, however, must be easily inactivated or separated during preparation of isolated chloro- plasts. This may indicate that the enzymes involved in this cycle are not part of an organized structure, except insofar as the chloroplast structure tends to enclose these enzymes and retain within itself a space with high reducing potential. It seems likely that this reducing power does not diffuse out of the chloroplast. If it did, one might expect greater inhibition of respiration in the light than is actually observed in cells which contain chloroplasts (12,31). It is significant that inhibition of respiration during photosynthesis is most pronounced in some organisms which do not contain organized chloroplasts (11,13) and this fact again indicates that one role of the chloroplast structure may be to retain reducing power at a high level for photosynthesis. Another bit of evidence relating to this possi- bility is the observation that the conversion of photosynthetic intermediates to respiratory intermediates is inhibited in the light (18). This might be attribtued to the reducing condition within the chloroplast. In this case, the inhibition is believed to be due to the reduction of a specific cofactor rather than to a general reduction of metabolic intermediates which might other- wise enter the oxidative pathway. The mechanism by which the chloroplast might retain the reducing power is not entirely clear, since such carriers of reducing power as TPNH might be expected to diffuse out of the chloroplast rather freely. One possibility is that the primary carrier of the reducing power is itself a protein complex resistant 32 PHOTOSYNTHESIS to dialysis. Thus some type of metalloprotein might carry the reducing power. Another possibility is that reduced thioctic acid, a dithiol, might be a carrier of reducing power and might be attached by its carboxyl group to form a part of a lipid. It may be simply that the enzymes which reduce CO2 in the chloro- plast are so active that the reducing power is largely used before it can diffuse out of the chloroplast. The other reagent requirement for the reduction of CO2 at photosynthetic rates seems to be a high level of ATP, as will be seen later in this discussion. Bradley (D. F. Bradley, private communication) finds that the level of ATP is higher in the dark than in the light if the plant is in an atmosphere of 4% CO2 in air, lower in the dark than in the light if the atmosphere is nitrogen. Strehler (54) finds that there is an increase in the level of ATP in the cell upon turning on the light after a period of darkness. This increase occurred during the induction period when the rate of carbon reduction had not yet reached its maximum value. These facts might be explained in the following way. In the dark with O2, respiration and the production of ATP by some of the energy available from respiration proceed in both the chloroplast and the space outside. When the light is turned on the rate of production outside the chloroplast is not immediately affected, but inside the chloroplast there is a com- bination of several effects. Normal dark respiration ceases owing to the production of reducing power and in particular reduced thioctic acid (18), while at the same time the production of ATP through energetic coupling of the recombination of some photo- chemically produced oxidizing and reducing agents begins (4). The result of these various rate changes is an initial increase in the level of ATP. As the rate of CO2 reduction increases, the demand for ATP increases. This results in a decrease in the level of ATP in the chloroplast, perhaps to a value much less than during the dark time, and ATP will begin to flow into the chloroplast from the cellular space outside. In an atmosphere of N2, on the other hand, respiration will cease in the dark, lead- ing to a lower level of ATP in both chloroplast and cytoplasm, 33 J. A. BASSHAM AND M. CALVIN but upon turning on the light some ATP will be formed in the chloroplast, owing to the oxidation (back reaction) of some of the photochemically generated reducing power by O2 liberated from photosynthesis, or by an intermediate oxidant. The formation of ATP by the oxidation of an intermediate reductant (i.e., TPNH) is known from studies of oxidative phosphorylation. That some of the ATP was formed during the transfer of the electrons between intermediate reductant (TPNH) and inter- mediate oxidant (i.e., metalloflavin and/or cytochromes) is also an intergrai part of this process, although ultimately the electrons ([H]) are transferred to molecular O2. The experimental observation of the formation of ATP by the recombination of photo-produced intermediate reductants and oxidants without the possibility of the intervention of molecular oxygen has been made by Frenkel (28) using the plastids isolated from purple bacteria which are incapable of making molecular O2. A simi- lar observation has been made by Arnon and co-workers (2) using specially prepared whole chloroplasts from spinach. In the latter case it was necessary to add other redox systems to replace molecular O2, such as the naphthoquinone related to vitamin K, or ascorbic acid. In addition some participation of added FMN was demonstrated. In regard to the location of the processes of photosynthesis, then, the chloroplast or its immediate environs seems to be the unique location of all important parts and may provide a con- tainer or matrix for the complex system of enzymes and cofactors involved in the carbon reduction cycle as well as a support for the pigment and enzyme structure which carries out energy conversion and decomposition of water. The Carbon- Reducing Enzymes Two powerful tools have been brought to bear on the problem of the path of carbon dioxide reduction during photosynthesis during the past decade : tracer elements and paper chromatog- raphy. It is unlikely that our present degree of knowledge of 34 PHOTOSYNTHESIS carbon reduction would be anywhere near as far advanced had either of these tools been missing. In any event, it is now possible to trace the entire path of carbon reduction from the entry of carbon dioxide into the plant cell to the formation of sugars and other end products (4). The essential steps in this process are ( 7) the carboxylation of a sugar phosphate, ribulose diphosphate, to give two three-carbon molecules, both of which are probably phosphoglyceric acid (see discussion later in this section) ; (2) the reduction (with the aid of ATP) of phosphoglyceric acid by reducing agents formed from water by the photochemical re- actions ; and (3) the rearrangement of most of the molecules of reduction product, phosphoglyceraldehyde, to give (with the aid of ATP) more ribulose diphosphate for continued carboxylation, with a smaller part of the sugar phosphates being drained ofT as end products. The individual steps in this process are shown in Figure 1, together with the enzymes believed to be involved. The carbon balance of this system is indicated in the following scheme. 3C5 + 3CO2 J^^I^ 6PGA (phosphoglycerate) 6PGA -^^^ 6C3 6ATP 2C3 > Ce Ce + 2C3 > C5 + C7 Cv + C3 > 2C5 Q A.TP 12 [H] + 3C0.2 — > C3 + 3H2O A slightly different version of the sugar rearrangement might be proposed in which different reactions replace those between fructose-6-phosphate and glyceraldehyde phosphate by trans- ketolase to give ribulose-5-phosphate and a four-carbon aldose which then combines with dihydroxyacetone phosphate (aldo- lase?) to give sedoheptulose-l,7-diphosphate. The modified version would postulate that two molecules of fructose-6- phosphate are split and recombined by transketolase and trans- aldolase to give directly sedoheptulose-7-phosphate and ribulose- 35 J, A. BASSHAM AND M. CALVLNJ T T T © o o O O o o- -o- -l>- -U -o X J. 1 I X V C o c o ja ii OS o a, H be X X x©/ o o o o o ^ty X T •^ o o o o O 1 II 1 1 1 o-o- -o- -<.>- -<.> T T w X 36 PHOTOSYNTHESIS 5-phosphate. Although it is not possible to choose unequivocally between these two possibilities at present, evidence obtained from degradation of the various radioactive sugar phosphates obtained from soy bean leaves which were exposed to G^^02 for a very short time, indicates that the original proposal (as shown in Figure 1) is correct. These degradation results are shown in Table I, which is derived from Table I of reference 4 by assuming that the carbon atoms numbers 1, 2, and 6 have the same C^^ level as that found in carbon 7. TABLE I Distribution of C^^ in Sedoheptulose Isolated from Soy Bean Leaf Time of exposure to G'^02, sec. H2C— OH c=o I HO— C— H I HC— OH I HG— OH HC— OH H2G— OPO3H In either version for sugar rearrangement carbons numbers 4 and 5 of sedoheptulose are derived from carbons 3 and 4 of fructose, respectively. However, in the original version (Figure 1) carbon 3 of sedoheptulose is derived from the carbon 1 of glyceraldehyde phosphate directly, whereas in the modified version carbon 3 of sedoheptulose is derived from carbon 3 of fructose and therefore should have the same labeling at all times as carbon 4 of the sedoheptulose. Since this is not the case, the original version of the rearrangement seems more likely, espe- cially since at very short exposures of the plant to C"02, carbon 3 is much more highly labeled than carbon 4, as would be expected 37 0.4 0.8 2 2 33 39 8 18 49 38 2 2 J. A. BASSHAM AND M. CALVIN if it were derived from carbon 1 of the more recently formed dihydroxyacetone phosphate. It is to be noted that the difference in labeling between carbons 3 and 4 of fructose (hence 4 and 5 of sedoheptulose) was explained as arising from the formation of dihydroxyacetone phosphate (from which carbon 3 of fructose is derived) sub- sequent to the formation of glyceraldehyde phosphate (the precursor of carbon 4 of fructose) , Of all the enzymes indicated in Figure 1 only two, the enzyme for the carboxylation of RuDP and the enzyme required for the phosphorylation of ribulose monophosphate, have not been found so far in tissues other than green plants. The preparation of the carboxylation enzyme in a cell-free extract has been reported by Quayle and co-workers (45), and Weissbach et al. have isolated an enzyme preparation which causes the phos- phorylation of RuMP to RuDP (63). It appears that the phosphorylation and the carboxylation may be unique steps in the carbon reduction cycle. If these steps are unique to photo- synthesis, they may be so only because they either require enzymes not found outside green plants or because the particular concentrations of metabolites within the chloroplast are required if these reactions are to proceed at a finite rate. Some evidence bearing on this point has been obtained in this laboratory. The purple photosynthetic bacterium, Rhodopseudomonas, is not only capable of photoreducing COo with H2 but it can also reduce CO2 in the dark with Ho or with organic substrates provided O2 is present (53,58). This is usually spoken of as an energetic coupling of some of the energy released in the reaction 2H2 + O2 > H2O to help accomplish the reduction reaction 2H2 + CO2 > (CH2O), + H2O Since the free energy change for the latter reaction as written is negative, it appears that the presence of a stronger oxidizing agent than CO2 is required to produce some component or 38 PHOTOSYNTHESIS reagent necessary to permit the reaction to proceed. This reagent may be ATP, and the oxidant required may be either 0-2 or another oxidant produced photochemically. It is the reaction of this oxidant (or Oo) with the activated (Ho) which can produce ATP by the mechanism almost certainly similar to that ordinarily known as "oxidative phosphorylation." Only under special conditions such as these, in which a high level of H (from Ho) and ATP are present simultaneously, may we expect the photosynthetic carbon cycle to operate (53). The precise detailed mechanism of the carboxylation re- action is not yet known with certainty. The first step may be the enolization of the ribulose diphosphate to form a double bond between carbon atoms 2 and 3. An addition of the carbon dioxide may then take place with the shift of an electron from tlie hydroxyl hydrogen on carbon 3 to one of the carboxyl oxygens. This hydrogen would come off as hydrogen ion leaving a carbonyl group at carbon 3. The resulting compound would be a /3-keto acid. H2CO(P) HsCOCD f O ^^C C-OH CO2 + HC-OH »► C-OH *■ HC-OH HC-OH H2C-0(P) H2G-0(P) H.C-OCP) H2C-0(P) ^^C--C-OH -O2C-C-OH \ ^C^OH ^ C=0+H+ ' HC-OH HC-OH H2CO® H2C-0(P) Once formed, the j8-keto acid appears to undergo "acid splitting" into two molecules of PGA. This is analogous to the splitting of acetoacetate to two molecules of acetate. "Ketone 39 J. A. BASSHAM AND M. CALVIN splitting" would produce CO2 and a 3-keto pentose. Other possibilities are hydrogenation of the carbonyl group followed by a rearrangement which would result in one molecule of PGA and one molecule of phosphoglyceraldehyde ; or a direct splitting or "reverse benzoin" type reaction which would result in the formation of one molecule of phosphoglyceraldehyde and one of 3-phosphohydroxypyruvic acid. Since PGA is known to be one if not the only product of the carboxylation reaction in vivo, it is necessary to consider only the "acid splitting" and reductive splitting. There was con- siderable evidence for the acid split leading to PGA only, even before the enzyme was studied in vitro. Studies were made of the change in concentrations of RDP and PGA which occur in algae immediately after turning off the light (18 and Bradley, private communication). It was found that the concentration of PGA rose very rapidly under these conditions while that of RuDP dropped very rapidly. This was explained as resulting from a cessation in the reduction of PGA due to the sudden decrease in photochemically formed reducing agent, but at the same time, a continuation of the carboxylation of RuDP leading to the formation of PGA. The latter reaction, therefore, was not apparently affected at once by the lack of illumination. This result indicates that the formation of PGA from RuDP and CO2 does not necessarily involve a reduction, although it is possible to postulate for this reaction a reducing agent with a longer half life in the dark than the reducing agent required for the reduction of PGA. Finally, recent work in this laboratory (J. Mayaudon, private communication) with a somewhat more purified enzyme preparation, and with C^^-labeled RuDP and CO2, indicates that the only product of the carboxylation reaction in vitro is PGA. Despite these arguments, there still remains some possibility that the first product of the carboxylation reaction, the six- carbon j8-keto acid, might undergo different fates in the light and in the dark. In the dark, splitting to two molecules of PGA would proceed as discussed above; but in the light, with 40 PHOTOSYNTHESIS reducing agent (TPNH or DPNH) in plentiful supply, the j3-keto acid might be reduced and then split by a rearrangement to one molecule of PGA and one of phosphoglyceraldehyde. This would provide a route for the formation of one molecule of triose phosphate without the requirement of an ATP molecule. This possibility should be kept in mind during the following discussion of the energy requirements of the carbon reduction cycle, which is based on the assumption that each molecule of triose phosphate formed requires the supply of a molecule of ATP. Estimation of the free energy change for the reaction of RuDP with CO2 and water to produce two molecules of PGA showed a net free-energy change at physiological conditions which was either zero or negative (4), indicating that the reaction would proceed under the influence of a suitable catalyst without energetic coupling with some other reaction. It thus appears that energy is supplied to the cycle in the form of TPNH or ATP. Both are involved in the reduction of PGA to phos- phoglyceraldehyde, whereas only ATP is needed for the phos- phorylation of RuMP. For each carboxylation, using one molecule of CO2 and producing two molecules of PGA, two TPNH molecules and two ATP molecules would be converted to TPN+ and ADP -f PO4 in the subsequent reduction of PGA to phosphoglyceraldehyde. The enzymatic formation of RuDP from ribulose monophosphate has been shown by Weissbach et al. (63) to require a molecule of ATP. Since the enzymatic conversion of triose phosphate to ribulose monophosphate proba- bly does not require the expenditure of any ATP or other sub- stances which supply energy through energetic coupling reactions the net supply of energy to the carbon reduction cycle for each molecule of CO2 reduced is that required for the formation of two molecules of reduced TPN and three molecules of A TP as follows: 2(TPN+ + H2O > TPNH + H+ + V2 O2) AF = +103 kcal. 3 (ADP + PO; > ATP) AF = +32 kcal. which adds up to 135 kcal. (If one molecule of triose phosphate 41 J. A. BASSHAM AND M. CALVIN is obtained without consuming ATP, then the total requirement is 2 TPNH and 2 ATP molecules, or 124 kcal.) Since the energy required for the reaction CO2 + H2O > (C6Hi206)v. + O2 is about +116 kcal., about 19 kcal. apparently have to be expended to make the cycle operate at a high rate. The 135 SUCROSE I I * HEXOSE PHOSPHATES,*^ I I TRIOSE PHOSPHATES PENTOSE CYCLE PHOSPHOGLUCONIC ACID'-. ..-:»SEDOHEPTULOSE PHOSPHATES 2 [H] <- ATP PHOTOSYNTHETIC CARBON CYCLE ■2[H] ATP PENTOSE PHOSPHATES* -ATP RiSULOSE DIPHOSPHATE CO2 ATP<- PEPA PYRUVIC ACID I I /'x THIOCTIC ACID / \^REQUIRED ACONITIC ACID ISOCITRIC ACID 2M CO, it 2iH] ACETYL CoA CITRIC ACID A I / FAT OXALOACETIC ACID OXALOSUCCINIC ACID \ \ \ *C02 I KREBS CYCLE KETOGLUTARIC ACID SUCCINIC ACID MALIC ACID ^ ^2 Hi fumaric acid Fig. 2. The relation of carbon paths in photosynthesis and respiration. kcal. (or 124 kcal.) requirement, on the other hand, represents the absolute minimum of energy, which must be obtained from light, exclusive of any losses in the photochemical and other 42 PHOTOSYNTHESIS energy transfer reactions. We shall return to a discussion of the energy requirements for these other processes later. The relation between photosynthesis and respiration is shown in Figure 2, where respiration is indicated by dotted lines and photosynthesis by solid lines. The points at which reducing agents and ATP are utilized in photosynthesis or produced in respiration are indicated. It can be seen that the path of carbon reduction in photo- synthesis is far from a simple reversal of its path in respiration. However, the conversion of PGA to hexose in photosynthesis and the reverse in respiration appear to follow siinilar if not identical paths. Moreover, some of the pentose cycle path seems to have some steps in common with photosynthesis. THE LIGHT REACTION In considering the most characteristic reaction of photo- synthesis, the light reaction, it is necessary to keep in mind the physical arrangement of the chloroplast structure as it is now thought to exist. The fine structure of the chloroplast (or of the grana into which some chloroplasts seem to be divided) is believed to be laminar, with very thin, perhaps monomolecular layers of chlorophyll alternating with thicker layers of proteins and lipoproteins. Although the organization and thickness of these layers seem to vary with the species, particularly in some algae as compared with higher plants, it seems likely that the electrochemical fields that exist at the chlorophyll-protein and lipoprotein interfaces are similar in all cases. Thomas et al. (56) have recently studied the Hill reaction in particles of sublaminar size. Measurement of oxygen evolution as a function of the particle size showed an ability of particles as small as 10^ A^ in volume to carry out the Hill reaction with about 50% the specific activity of intact grana, but a rapid decrease in such ability with smaller particles, and no activity with particles with volumes of less than 2 X 10^ A^ at a given light intensity. However, higher light intensities resulted in Hill reaction activity with even smaller particles, so it was concluded that if there is a physical 43 J. A. BASSHAM AND M. CALVIN unit of about 10^ A^ volume, or 100 A diameter, it is capable of producing oxygen in the Hill reaction even if partially frag- mented. Earlier, Milner et al. (42), using the photochemical reduction of 3,6-dichlorobenzene indophenol as a measure of activity, studied the Hill reaction with particles of subgranar size and obtained activity with a mixture of particles, the majority of which were about 20 A in diameter. The same workers (43), after measuring Hill reaction activity with these particles of about one-fourth that of intact chloroplasts, found that the particles could be aggregated by precipitation with a variety of salts in the presence of 15% to 20% methanol in such a way as to produce particles with increased activity. Loss of lipid material resulted in loss of activity. These experiments indicate that there are physical units, about 100 A in diameter and containing about 200 chlorophyll molecules, which are capable of carrying out the Hill reaction nearly as efficiently (^-^60%) as intact chloroplasts. If these units are broken down further, Hill reactivity falls off rapidly, but is present to some extent with considerably smaller particles, especially with high light intensities. Moreover, much of the original activity can be restored by reaggregation. The require- ments for photodecomposition of water with chlorophyll seem to be some aggregation of chlorophyll, lipids, and protein. Rodrigo (51) has studied associations of a few molecules of chlorophyll, finding no shift of the red absorption peak to 6800 A. However, when chlorophyll was mixed with some ground-up leaves which contained no chlorophyll initially, some shift of the red absorption peak toward 6800 A and some oxygen evolution in light with quinone were observed. The implication of this result seems to be that a degree of aggregation of the chlorophyll molecules sufficient to shift the red peak as far as 6800 A is required before the Hill reaction can function. It is interesting to note in this connection that the absorption spectra of chloro- phyll in crystals of varying size formed from ethyl chlorophyllide in acetone has been studied by Jacobs and Holt (37) and a shift 44 PHOTOSYNTHESIS to the longer wavelengths with increasing crystal size observed. A maximum shift of the red peak to about 7450 A was found, beyond which there was no further shift with larger crystals. This shift is ascribed to resonance interaction between identical chromophores and to migration of the resonance energy through the array. The phenomenon of energy migration through the pigment aggregate brings us to a consideration of the light absorption process. According to present views (24) it appears that most of the energy absorbed by plant pigments for subsequent con- version to chemical energy is either absorbed directly by chloro- phyll a or transferred to chlorophyll a. The excited state is presumed to differ in energy from the ground state by only about 42 kcal./mole, corresponding to 6800 A light, the longest wave- length light that brings about photosynthesis with high efficiency. It is postulated that the extra energy that is absorbed at shorter wavelengths, either by chlorophyll a or other pigments, is con- verted to vibrational energy and eventually lost as heat. Thus the course of energy transfer from chlorophyll on would be unaff"ected by the wavelength of the light absorbed. It has long been known, in fact, that the yield of oxygen evolved per quan- tum of light absorbed is as high for red light as at any other wavelength. On the other hand, light absorbed at wavelengths around 4800 A produces a relatively lower quantum yield, indicating that pigments which absorb in that range may transfer their energy to chlorophyll inefficiently or may transfer some of their energy to other chemical reactions inefficiently. In the latter case, the course of subsequent steps in photosynthesis should be to some extent affected by the light energy converted to chemical energy without passing through the excited chlorophyll a stage. Such an effect has recently been reported by Voskrenskaya (59), who has studied the products of carbon reduction, using G'^ as a function of the wavelength of the incident light. She reports an enhanced ratio of protein to carbohydrate in blue light as compared with red light. This effect seems to be more pro- 45 J. A. BaSSHAM and M. CALVIN nounced at longer periods of time than those required for the early steps in the reduction of carbon described earlier. It seems likely that such effects are due to changes in the relative rates of transformation for various photosynthetic intermediates into other substances. These changes in rate of specific reactions are probably photocatalytic and the light energy is used only in the activation or deactivation of an enzyme. Another photoactivation has been reported by Warburg et al. recently (61). In this case it was found that the mano- metrically measured quatum yield with either red or green light was greatly affected by catalytic amounts of added blue light. Some rather special conditions for the culturing of the algae used in the measurements appear to be necessary for tliis effect to be seen, since in other experiments reported by Warburg, high quantum efficiencies were obtained with red light only, so that the role of the blue light again appears to be in the activation of an enzyme, but in this case, one which affects the efficiency of the energy conversion path. Another possible interpretation of this effect will be presented in the section on the quantum requirement. The step in photosynthesis which is perhaps most character- istic is the efficient conversion of energy of an excited state of chlorophyll a to the stored energy of new chemical bonds. The first point to consider is the quantity of energy actually available for transformation. It has been frequently proposed that the primary excited state of chlorophyll a has such a short half life (10~^^ sec.) that direct conversion of the electronic energy of this state to some chemical reaction or the transfer to some other pigment might not take place before the energy was lost by fluorescence. Consequently, it was believed that transition to a metastable triplet state with concurrent loss of some of the electronic energy must first occur, followed by conversion or transfer of the energy of the triplet state. However, according to Scheibe (52), transfer of electronic energy in a condensed pigment system can occur in 10~^* sec. It seems possible, therefore, that in the aggregated chlorophyll-lipid-protein 46 PHOTOSYNTHESIS system, the full 42 kcal. might be transferred to a suitable proxi- mate acceptor, at least insofar as competition with fluorescence is concerned. The conversion of electronic energy to chemical energy may involve either the transfer of electronic energy to some acceptor molecule other than chlorophyll followed by energy conversion, or the transfer of an electron from the chlorophyll aggregate (array) to some other molecule and a corresponding recovery of an electron by the positively charged chlorophyll molecule group from some other source. Either of these types of conversion seems possible at the present time, and we will consider both. In order to accept electronic energy from chlorophyll and convert it to chemical energy, a compound, which could be called the quantum converter, should possess several properties. It would have to be closely associated with, or incorporated in, the chlorophyll aggregate, and should possess some state differing from its ground state by about 30 to 40 kcal., in order to accept the energy of a quantum from the chlorophyll. It would convert this energy by some process which occurs in a time that is short compared to the time required for the return of the energy to chlorophyll or its dissipation in a nonuseful way, and in so doing would form new chemical configurations which would store most of the energy received from the chlorophyll. By new chemical configurations, we mean only that some nuclei would have moved sufficiently to prevent the loss of the received energy either by its return to the donor or conversion to heat ; that is, the energy would now be trapped in a new configuration which could not return easily to the former one. When the energy had undergone this conversion, the quantum converter, in its new form, would pass the energy on. Since, in this picture, the most energetically difficult step, the photolysis of water, has yet to occur, we will suppose that the new form of the quantum converter would then react with water to produce a reducing agent and some form of hydroxyl or per- oxide compound which can ultimately liberate oxygen. A requirement for this reaction is that the resulting bond energies 47 J. A. BASSHAM AND M. CALVIN plus about 30 to 40 kcal. be about the same as the bond energies of broken bonds, if the reaction is to provide a means of efficient energy conversion. The products of the reaction should not be able directly to recombine easily in such a way as to produce water again (back reaction) but should be able to react separately to produce ultimately oxygen and reducing power. Finally, the quantum converter molecule should be able to return to its orginal state, after having transferred its electrons (reducing power) and oxygen to other molecules. In addition to the requirements imposed by the mechanism, there is the necessity that the quatum converter be present in sufficiently high concentration in the chloroplast to account for the observed rates of quantum conversion, both in steady-state photosynthesis and in flashing-light experiments. This require- ment of concentration will depend, of course, on the time required for the quantum converter to undergo one cycle, from acceptance of the quantum of electronic energy and to return to its original state. Thioctic acid (lipoic acid) has been proposed as a com- pound which might satisfy all the above requirements (3,16). It was suggested that following the absorption of a quantum by chlorophyll, this energy is transferred to thioctic acid, causing the S — S bond of the latter molecule to break to give a diradical. It was postulated that this diradical then reacts with water, forming a sulfhydryl and a sulfhydroxyl group. Dismutation of this reaction product results in a dithiol molecule and a disulfenic acid. The dithiol would then reduce DPN or TPN and would itself be reoxidized to thioctic acid, while the disulfenic acid would undergo a series of reactions resulting in the reformation of thioctic acid and the liberation of oxygen. All of these reactions from the dismutation onwards would probably involve catalysis by metalloproteins. The lipophilic properties of thioctic acid and its small molecular size would permit close association with the chloro- phyll aggregate and might account for the apparent lipid requirement of the Hill reaction. The formation of the diradical 48 PHOTOSYNTHESIS by breaking the strained ring has been suggested as the mechanism for storing the accepted electronic energy. Estimates of the bond energy for the S — S bond in simple open-chain molecules ranging from 50 to 70 kcal. together with estimates for the reduction of the dissociation energy of the S — S bond due to ring strain in the 6,8-trimethylene disulfide ring of 10 to 25 kcal. indicate the possibility that formation of the free radical could store 30 to 40 kcal. (3). A number of studies with model systems (6,8-trimethyl- ene disulfide in u.v. light) were presented which indicated, among other things, an ability of the trimethylene disulfide to react with ROH (alcohol) or water under illumination to form a thiol and a sulfenic acid or ester. + light + ROH S — S H OR Two pieces of biological evidence were off'ered to support the suggestion that thioctic acid participates in the quantum conversion. It had already been observed that in photosynthe- sizing plants the conversion of photosynthesis intermediates to Krebs cycle intermediates is inhibited during illumination, but occurs rapidly in the dark. Since this conversion involves the formation of acetyl CoA from pyruvic acid, a reaction which requires thioctic acid as a cofactor (14,33,44,48,49), it had been suggested (18) that this reaction is blocked in the light because most of the thioctic acid is maintained in the reduced dithiol form within the chloroplast. The reduction of thioctic acid could occur, of course, as a secondary reaction resulting from the formation of some other primary reducing agent in the light- energy conversion. However, the favorable characteristics for quantum conversion which the thioctic acid possesses together with the indication that it was reduced in the light led to the supposition that it might be in the primary reaction. When algae are allowed to take up added thioctic acid in the dark for several minutes and then killed with quinone and the 49 J. A. BASSHAM AND M. CALVIN Hill reaction studied in the light (9) it was found that the initial rate of oxygen evolution is increased by as much as 50% over the rate observed in the control in which no thioctic acid was added. This result could be interpreted as evidence for the participation of thioctic acid in the primary conversion step or as an acceleration of a dark reaction transfer of reducing power to quinone. Thus the biological evidence for the role of thioctic acid as a quantum converter is suggestive but not unequivocal. However, since the oxygen evolution in the Hill reaction is insensitive to inhibition by parachloromercuri- benzoate, a more limited role of thioctic acid in which it acts only as an acceptor of an electron from chlorophyll seems the more likely than the above role, in which it removes this electron from oxygen after receiving energy from excited chlorophyll. Of the various possible chemical reactions of chlorophyll under the influence of light we shall consider only the transfer of an electron. Since there is evidence that the light absorption process functions with chlorophyll in an aggregated system, it is interesting to consider, instead of the reaction of a single chloro- phyll molecule, the possibilities that exist with some sort of orderly array of chlorophyll molecules. This array is probably not actually crystalline chlorophyll but may well be an orderly arrangement of chlorophyll molecules associated with other molecules and protein or lipoprotein. We may think of the electronic system of such an aggregate as a single unit in which the TT electrons of the chlorophyll molecules interact. The absorption of an electromagnetic quantum will raise one electron of this system from the ground state in which it is con- fined to a single molecule into a state in which it may migrate throughout the array, i.e., into a conduction level. If there is built into this structure a permanent polar character such as exists at a "p-n" junction, for example, these photoconduction electrons will diff'use toward the positive end of the permanent dipole, leaving a positive hole to diffuse in the opposite direction. Thus a separation of charge will be induced by the light which may be neutralized by a suitable electron acceptor at one 50 PHOTOSYNTHESIS end, and a corresponding electron donor at the other end, to drop electrons into the positive holes that have been photo- created. In order to complete the separation of the electron and the positive charge and make use of the electrical energy avail- able, all that is needed is either a semiconductor which will transmit only electrons or positive charges, or else an acceptor molecule which can accept either an electron or a positive charge (i.e., contribute an electron) or both, in such a way as to produce an irreversible change. The possibility of a semiconductor is an interesting one in that it provddes a possible function for the lipid constituents. One might consider most of the lipid material as an insulator with occasional conductor molecules to pass electrons through. Such a function might be served by a conjugated molecule like a carotenoid which could accept an electron at one end and give an electron to a suitable acceptor at the other end. At the same time, the positive charges left behind would be reacting with water, probably through the agency of some metalloprotein, to produce oxygen. The electron acceptor, in the case of the Hill reaction, could be the supplied oxidant such as quinone, while in photosynthesis the acceptor could be the primary carrier of reducing power (thioctic acid). The conductor function for a carotenoid compound might explain the stimulation of photosynthesis by catalytic amounts of blue light observed by Warburg et al. (61). Warburg has suggested the participation of carotenoid somewhere in the transfer of electrons between the photochemical reaction and the reduction of carbon dioxide as an explanation of the blue- light effect. It should be noted, however, that Stanier (R. Stanier, private communication) has studied mutants of Rhodo- spirillum which contain no carotenoids but which nevertheless are able to carry out reduction of carbon dioxide during photo- synthesis. The advantage of the semiconductor arrangement would be the physical separation of the points at which reducing agent and oxidizing agents are formed. Also the nonspecificity of 51 J. A. BASSHAM AND M. CALVIN oxidants required for the Hill reaction could be explained, since they could be reduced directly by electrons supplied by the photoactivation of chlorophyll rather than by some specific primary reducing agent. During actual photosynthesis, a specific reducing agent would undoubtedly be formed and would provide a more efficient transfer of the energy available from the electrons obtained from the photochemical reaction. We would expect that this compound would have special properties which would particularly suit it to the task of accepting electrons and, in its reduced form, transferring energy to the carbon reduction apparatus. It might be expected that this compound would stimulate the Hill reaction owing to its special qualifications for receiving electrons. For example, if thioctic acid were the com- pound receiving the electrons from the chlorophyll during photosynthesis, it might be expected that thioctic acid would stimulate the Hill reaction under suitable conditions even though not required for the Hill reaction to function. Such a stimulation has been observed by Bradley and Calvin (9), who studied the rate of oxygen evolution in the Hill reaction as a function of added thioctic acid. When quinone was added as an oxidant at a concentration which produced the highest rate of evolution of oxygen with quinone alone, it was found that the addition of thioctic acid in a molar concentration only 0.1 as great asthatof the quinone produced a 35% stimulation of the initial rate. Moreover, this stimulation was observed with 6,8-dithiooctanoic acid (6-thioctic acid) only, whereas 5-thioctic acid and 4-thioctic acid were not eff'ective. The reduced form (dithiol) of thioctic acid and the more oxidized form (the sulf- oxide) were also found to be ineffective. It appears that, barring some enzymatic specificity which seems unlikely in the Hill reac- tion, the special property of 6-thioctic acid which is responsible for its activity is the ring strain of the five-membered ring which facilitates breaking of the sulfur-sulfur bond. One advantage of considering the chlorophyll as an aggre- gated system is that it permits a more reasonable mechanism for the transfer of one electron at a time, with each electron re- 52 PHOTOSYNTHESIS quiring one quantum of light energy. This corresponds to the well-known four-quantum theory in the primary step, since the transfer of four electrons, requiring four quanta, are required to form one molecule of O2. Reactions between a single molecule of chlorophyll, water, and hydrogen or electron acceptor are difficult to formulate, since one is faced in that case with the necessity either of absorb- ing two consecutive quanta in one chlorophyll molecule in order to have enough energy to form oxygen and reducing agents of the strength of TPNH (about 51 kcal.) or else of forming oxygen and a reducing agent of insufficient strength which could be used in subsequent reactions involving dismutations of energy to form better reducing agents. Another alternative is that a single molecule of chlorophyll, activated by one quantum, reacts with some activated, hydrated compound in which the O — H bond could be more readily broken, and thus has left over enough energy to form a good reducing agent. It may well be that water is in fact incorporated into some compound to weaken the O— H bond before the O — H bond is broken regardless of the mechanism of electron transfer, but it is doubtful if this activation is sufficient to permit the formation of oxygen and reducing power of the strength of TPNH at the same time by one quantum. Recent proposals involving reactions in which one molecule of chlorophyll provides both electrons in a given H2O photolysis include the one by Levitt (39), who suggests that a chlorophyll molecule, excited by one quatum of light, gives up an electron to thioctic acid forming oxidized chlorophyll, after which the molecule of oxidized chlorophyll absorbs a second quantum and transfers a second electron. The resulting dipositive chloro- phyll then reacts with water to produce hydrogen ion and oxygen. In the meantime, the thioctic acid has been reduced by the two electrons to the dithiol. On the other hand, Wessels (64) has proposed a one quan- tum per two electrons reaction in which a much weaker reducing agent, reduced vitamin K, is produced. This reducing agent is 53 J, A. BASSHAM AND M. CALVIN then used in part to produce ATP and in part to produce a reducing agent of the level of TPNH through the expenditure of ATP in a coupled reaction. Since the formation of reduced vitamin K and oxygen from water and vitamin K is said to require 39 kcal., the energy of one quantum would have to be used with nearly 100% efficiency. Such an efficient mechanism will be especially attractive if the very low quantum require- ments reported by Warburg prove correct. The presence of vitamin K in chloroplasts and its concurrent formation with chlorophyll (23) are also favorable to this suggestion. Finally, its oxidation-reduction potential is close to that measured with illuminated chloroplast preparations (50). The mechanism proposed by Wessels for the formation of ATP from reduced vitamin K is reasonable but energetically very inefficient in that only one ATP is formed for each molecule of reducing agent used. No specific mechanism was proposed for the formation of TPNH from TPN+ by the oxidation of reduced vitamin K and the conversion of ATP to ADP and inorganic phosphate, but this reaction would be a bit uphill energetically, since the dif- ference in redox-free energies between TPNH and reduced vitamin K is apparently about 12.5 kcal., slightly more than the 10 or 11 kcal. now thought to be available from ATP hydrolysis. Besides this, the proposal of Wessels requires the steps in the liberation of O2 from whatever intermediates may be formed in the reaction of oxidized chlorophyll with water to proceed with virtually no change in free energy. In other words, this proposed mechanism includes one very inefficient step and a number of steps which are nearly 100% efficient in energy transfer. Al- though this is entirely possible, we find it slightly more satisfying, from a thermodyamic viewpoint, to suppose that most of the steps involved in the energy transfer from one system to another proceed efficiently but with a small loss of energy in each, thus providing a smooth driving force throughout the entire process which will not require the enzymes at any stage to cope with infinitesimal concentrations of substrates. 54 PHOTOSYNTHESIS INTERMEDIATE TRANSFER SYSTEMS We have already anticipated, in the discussion of both the carbon reduction cycle and the light reaction, some of the re- actions involved in the transfer of reducing power and energy from the light reaction to carbon reduction and in the evolution of oxygen from whatever products are formed in the breaking of the O — H bond. Let us assume, for the time being, that the theories above, which require that tlie absorption of a quantum for each electron taken from water (whether by quantum con- version by thioctic acid or by transfer of an electron by the chlorophyll aggregate from water to reducing agent) are correct. Then there is ample energy in four quanta of 6800 A light (168 kcal./mole) to bring about the photolysis of two water molecules and the formation of two molecules of reducing agent of strength equal to TPNH: 2[H20 -f TPN+ = 1/2 Oo + TPNH + H+] AF - +103 kcal The entire excess of energy, some 65 kcal. minus whatever was lost in the primary absorption and conversion processes, will be available for the evolution of oxygen from the inter- mediates formed from the oxidation of water. It is possible that some of this energy might be used in the formation of some ATP from ADP and inorganic phosphate. Whether or not this occurs is very important in the evaluation of possible quantum require- ments. We have already arrived at a quantum requirement of two molecules of TPNH and three molecules of ATP for each molecule of carbon dioxide reduced. If one molecule of the primary reducing agent must be oxidized in order to form two or three molecules of the required ATP by some reaction similar to that which couples the energy of the oxidation of DPNH to the formation of ATP (38), tlien the total requirement for equivalents of reducing agent will be seven or six, requiring seven or six quanta (4). If all the ATP molecules could be supplied from the energy left over from the evolution of oxygen as suggested above, then the quantum requirement will obviously be only four. 55 y. A. BASSHAM AND M. CALVIN The decomposition of water will require by far the greater portion of the energy available from the primary photochemical reaction. From the half-reaction potential of the primary reduc- ing agent, which in our scheme must be about 0.3 v., we can say that the relative energy stored by the transfer of one electron to the reducing agent is about 7 kcal./mole (taking the energy re- quired to transfer an electron to 1 A^ H+ in contact with H2, g, 1 atm., as zero). If there is a loss of about 5 kcal. in the transfer of the electron from the chlorophyll aggregate, there is left, from a 42 kcal./mole quantum, about 30 kcal./mole to be stored in each positive charge ("hole"). This would then be a poten- tial of about 1.3 V. The potential required for the half reaction 2H2O = H2O2 + 2H+ + 2 ^- is about 1.2 v. at/?H 7 and 10"^ Af H.2O2. Thus the reaction will go as written, provided the very high activation energy required for the removal of electrons from water-oxygen atoms, which would result in formation of hydroxyl radicals in solution, can be overcome. We may suppose that the hydration of a suitable surface on the granar fragment, perhaps resulting in actual hydrated compounds, results in an orientation of — OH groups which permits the formation of O — O bonds concurrently with the removal of the electrons from the water. The formation of the positive and negative potentials dis- cussed above requires some mechanism for obtaining just the right distribution of energy to achieve the necessary oxidation and reduction. This can be accomplished by extending some- what further the proposal for the separation of charges through the agency of semiconductors. We may think of the subgranar unit as a photoelectric battery. The driving force for this battery is the light energy absorbed by the chlorophyll. The absorption of light produces in the aggregate conduction electrons and their corresponding positive "holes." This part of the structure can be considered a conductor after light absorption. On either side of the chlorophyll aggregate is a layer of semiconducting material. This material may be lipid or lipoprotein. One layer contains a 56 PHOTOSYNTHESIS permanent structural excess of electrons (?2 volume), permitting the conduction of positive charges. The other layer would contain a permanent structural deficiency of electrons {p volume), permit- ting the conduction of electrons. With the creation of mobile charges by light absorption there would follow a flow away from the chlorophyll aggregate and across the semiconducting layers. If the potential between these two layers could be measured, it would be found equivalent to ^^42 kcal./mole minus the 5 kcal./mole loss postulated above, or 1.6 v. If the circuit between these two "electrodes" is completed by chemical reactions, as it is in photosynthesis, the potential at each electrode, relative to the ground state of the system, will be simply that required by the oxidants or reductants with which the electrons and positive charges must react. Thus, in terms of our arbitrary "ground," which is the standard hydrogen electrode potential, the 1.6 V. potential across the "battery" will be distributed as 1.3 V. positive and 0.3 v. negative, since these are the potentials, relative to our "ground," with which the electrodes must react. From this point of view it appears that the recently developed solar battery (22) may have been preceded by a similar but much more efficient process in photosynthetic organisms ! The evolution of oxygen from hydrogen peroxide according to the reaction H2O2 = V2 O2 + H2O proceeds with a positive potential of 0.37 v. for \0~^ M peroxide, so that another 8.5 kcal./mole of excess energy is expended per electron. There is some question as to whether this reaction could be catalyzed by catalase (55), owing to the apparent lack of inhibition of the Hill reaction by cyanide. However, this reaction can be catalyzed by a number of simple inorganic compounds, so perhaps this problem is not too serious. More- over, inhibition of oxygen evolution in the Hill reaction by orthophenanthroline has been observed (29), so some iron- containing enzyme may be involved. Finally, the recent work of Chance (21) has demonstrated the formation of catalase- 57 J. A. BASSHAM AND M. CALVIN H2O2 complexes under aerobic conditions. It appears that this complex can form with concentrations of H2O2 as low as 10~^ M, Consideration of the above mechanism of oxygen evolution suggests that the place where energy might possibly be available for use in forming ATP, or perhaps additional reducing agent, is in the liberation of oxygen from peroxide. Some 17 kcal. are available from each molecule of peroxide. However, it is difficult, with only our present knowledge, to visualize the possible mechanism of this energetic coupling. On the other hand, it is attractive to suppose that the peroxide may be used in part to oxidize some ferrocytochrome (19) in a reaction catalyzed perhaps by peroxidase (19). Thus the requirement for an oxidizing agent to react ultimately with the primary reducing agent could be met without requiring oxygen. This is rather useful because of the evidence that molecular oxygen is not required for photosynthesis. Allen (1) has reduced the concentration of molecular oxygen in contact with photosyn- thesizing organisms to a value of 0.004 mm. Hg and finds, at this level, no diminution of the rate of photosynthesis. The absence of a back reaction involving molecular oxygen was also shown by the studies of Brown (10) with the mass spectrometer and iso topically labeled oxygen. It is interesting to suppose that the ferrocytochrome oxidized by H2O2 is reduced cytochrome /, discovered by Hill and Scarisbrick (35). It was found that this compound was present in considerable amounts in green chloroplast material and that it had an oxidation-reduction potential of +0.365 v., about 0.1 V. better as an oxidizing agent than cytochrome c. Since the oxidizing potential of H2O2 for the physiological conditions as given above is +1.2 v., there is a potential dif- ference between these two half reactions of 0.8 v., or a negative free energy change of 37 kcal. /mole for the oxidation of two reduced cytochrome / molecules with one H2O2 molecule. The oxidized cytochrome could then react with other electron carriers, perhaps other cytochromes, and eventually, with the primary reducing agent, or with TPNH. Since the 58 PHOTOSYNTHESIS oxidation-reduction potential of the latter is now considered to be —0.324 v. (15), there is a potential difference between cyto- chrome and TPN+ of 0.65 v., or a negative free energy of 30.3 kcal. for the oxidation of one mole of TPNH by oxidized cyto- chrome /. Very little is known about the mechanism of formation of ATP during the oxidation of TPNH. There is enough energy available in each of the steps suggested above to bring about the formation of 2 moles of ATP with ease. We can suppose that the general type of mechanism for the oxidative formation of ATP might involve esterification of a hydroxyl group with inorganic phosphate, dehydrogenation of an adjacent C — C or C — N bond with a suitable oxidizing agent to form a "high- energy phosphate group," a reaction with ADP to form ATP and an unsaturated alcohol, and finally, reduction of the unsaturated alcohol to the orginal substance. H -C- H -C- H -f HOPO3H H -C- OH H -C- I H OPO3H- + H2O H -G- H -G — + R I H OPO3H- ■^ RH2 H C— C— I H OPO3H- -G^=G- I H OPO3H- + ADP -C= OH =C h ATP H -G— C h R'H2 I H OH H H -> — G G h R' I H OH -> RH2 + R' + ATP R + R 'H2 + ADP + HsPOr — The — CH2 group of the reacting alcohol can also be — NH — . Considering the number of steps involved in the above mechanism, we could expect that at least 5 kcal. negative free- 59 J. A. BASSHAM AND M. CALVIN energy change would be required for the entire process, so that about 15 kcal./mole might be required for the formation of ATP by such a mechanism. It is thus possible that anywhere from 1 to 4 molecules of ATP might be formed for each molecule of primary H I H-0 Fe H I ,0-H II _ II + AMP-O-P-0 + HO-P-0" I I OH 0" Coenzyme and/or protein AMP-O-P I l?/6^ !?/0- Fe** P-OH 1 .0 AMP-O-P *PrOH;-- I I Fe*** Coenzyme and/or protein Coenzyme and/or protein ^v^. ° n ° ll/0\ II AMP-O-P P-0" n II /0\ II AMP-O-P ~P-0" + e Fe*** \ Fe' Coenzyme and/or protein 2 HgO Coenzyme and/or protein * ATP Fig. 3. A suggested mechanism for ATP formation via oxidation and reduction of a metalloenzyme. reducing agent used, provided electron carriers of suitable intermediate potentials are available. What these might be is difficult to say, but some cytochromes, for example, cytochrome b, lie intermediate between cytochrome / and TPNH. It is 60 PHOTOSYNTHESIS conceivable that there is still another type of process for the generation of ATP which differs fundamentally from the one outlined above, involving the intermediate formation by oxidation of a "high-energy phosphate group" in the form of an enol ester or anhydride. This is suggested by the increasing knowledge of "oxidative phosphorylation" and the participation of metalloproteins in this process, particularly metalloflavins and/or porphyrin, together with the fact that tripositive (higher valence state) ions form stronger and more compact complexes than do dipositive ions (lower valence state). An example of the manner in which such a process might operate is shown in Figure 3. The metal (in this case Fe) in its reduced form (Fe+2) could bind into a complex the terminal phosphate of ADP and one orthophosphate ion. This complex, upon oxida- tion to the higher valence state (Fe+^), would contract and induce the displacement of an OH~ from orthophosphate by the — 0~ atom of the terminal phosphate of ADP, thus produc- ing the stable ATP chelate of the Fe+3, in order that the ATP be liberated for other uses, the Fe+^ must be reduced again to Fc+\ for which the chelation constant is much smaller. The cycle is thus complete, the net result being the transfer of an electron from the reducing agent to some oxidizing agent of higher potential via the Fe atom with the trapping of some (if not all) of the energy of this transfer in the form of ATP. It is interesting to note that Chance (20) has observed an apparent requirement of the reduction step for the liberation of ATP in the course of oxidative phosphorylation. The process postulated for the formation of primary reductant and H2O2 has a quantum requirement of 4 for each H2O2 formed or 2 for each RH2 formed. The over-all quantum requirement will depend on the number of RH2 molecules which must be used to form ATP. If all required ATP can be supplied from respiration reactions outside the chloroplast, as may be the case at very low light intensities, the over-all quantum requirement will be 4. At high light intensities the over-all quantum requirement will be 10, 7, 6, or 5, depending on 61 J. A. BASSHAM AND M. CALVIN whether the number of ATP molecules formed per RH2 burned is 1, 2, 3, or 4, respectively. The controversy regarding the minimal requirement of photosynthesis has not been settled. The recent experiments reported by Warburg et al. (60) are very convincing, since quantum yields of four and even three are reported with high light intensities for long periods of time and without corrections for respiration, thus effectively answering criticisms based on the possibility that the reported quantum requirements are due to contribution of respiratory energy to photosynthesis. This leaves only criticisms based on the evaluation of the manometric technique. No such evaluation will be attempted here, but it may be worth while to point out one possible diffi- culty. Calculations of oxygen evolution and carbon dioxide uptake by the two-vessel method depend on the assumption of constant solubilities of these gases. However, the solubility of carbon dioxide may change significantly if the j&H of the medium changes, and this in turn could be influenced by the secretion of acid by the algae. For example, it has been observed in this laboratory that in high light intensities, algae produce glycolic acid. Tolbert (N. E. Tolbert, private communication) has found that glycolic acid formed in strong light by algae is secreted into the medium. One might speculate that perhaps blue light might activate some acid-secreting enzyme system, though there is at present no evidence for this. In view of this and many other difficulties inherent in the manometric determination of quantum yields, it has seemed desirable to try other methods of measuring oxygen liberation for quantum requirement calculations. One such study is that of Brackett et al. (8), who used a polarographic determination of oxygen and calculated quantum requirement as low as six. A relatively simple and straightforward experiment has now been carried out using an oxygen analyzer employing paramagnetic measurement of oxygen (5). A suspension of algae was placed in a thin plastic cell of large area. A mixture of 4% COo was passed through this 62 PHOTOSYNTHESIS suspension, then through an oxygen analyzer and a carbon dioxide analyzer. The circulation of gas through this closed system was accomplished by means of a pump. The indications from the analyzers were continuously recorded on a multipoint recorder. A uniform light field of 6300 A light was obtained from a spiral neon tube with suitable filters and incident and transmitted light intensities measured with a bolometer, which was frequently calibrated against three standard lamps. Small variations in the light field were mapped by a small photo- electric cell and suitable corrections made. The measurements of photosynthetic rate were dependent only on the measured change in the percentage oxygen in the system and the known volume of the system. Both of these are directly measured quantities which can be, and were, checked frequently with standard gas mixtures. Virtually no variation was found from time to time. The energy measurements were also simple and straightforward, since they involved essentially the measurement of energy absorption in a thin layer of large area. The algae, Chlorella pyrenoidosa, were grown according to previously described conditions (6) in 4% COo. The quantum requirements of these algae were tested after a variety of pre- conditions. The best condition found was selected and determi- nations were made as a function of light intensity. The values of the quantum requirement were determined both for the un- corrected rate of photosynthesis and for the rate, which we will call photosynthesis, obtained by subtracting the dark respiration rate from the uncorrected rate. This correction seems justified in view of Brown's (10) study in which isotopic oxygen was used to demonstrate that no sig- nificant change in rate of respiration of Chlorella pyrenoidosa took place during alternate 1 5 or 20 minutes of light and dark. The same paper, as well as the earlier ones by Emerson and Lewis (25), Weigl et al. (62), and Brackett et al. (8), showed an increase in the dark respiration rate (and the light rate as well in Brown's paper) which is produced by conditioning the plants with photo- 63 J. A. BASSHAM AND M. CALVIN synthesis as compared with leaving them in the dark for several hours. This indicates a photosynthesis enhancement of the rate 17 16 15 14 13 12 •/♦ 10 9- 8 - QUANTUM REQUIREMENT OF PHOTOSYNTHESIS BY Chlorella • UNCORRECTED O CORRECTED 5 P/R 10 15 I 10 15 20 30 q X 10-'^ 40 Fig. 4. Relation between quantum requirement in photosynthesis and the ratio of photosynthesis to respiration rate. of respiration over the rate required by the plants while resting in the dark. 64 PHOTOSYNTHESIS c ■*-" CS u Dh CO V u -a c C3 V G >^ CO O o a, o o t-l +-> u o XI a CO O a c o Sh re! u C 4-» bo 65 J. A. BASSHAM AND M. CALVIN If each of the experimentally determined quantum require- ments is plotted against the ratio of photosynthesis to respiration (/?/r), an interesting result is obtained. At high ratios of /)/r, where it would be expected that respiration could contribute relatively little of the ATP required for photosynthesis, both corrected and uncorrected quantum requirements approach the same value, about 7.4. At low values oi p/r, where respiration could contribute relatively more ATP, the corrected quantum requirement approaches four while the uncorrected quantum requirement becomes very great. This result, shown in Figure 4, lends credence to the theory that the two molecules of primary reductant required for the reduction of one molecule of CO2 are generated by four quanta but that when the ATP required for the reduction of CO2 must be formed by reactions consuming the reducing agent, there is a net requirement of about six or seven quanta for each CO2 molecule reduced. When the reduction in quantum requirement at low light intensities is multiplied by the total number of molecules of oxygen evolved and when the product (number of quanta "saved" by respiration) is compared with the enhancement of respiration due to photosynthesis, it is found that about seven quanta are "saved" for each extra molecule of oxygen taken up by photosynthesis enhancement of respiration over the resting dark respiration. Since about seven molecules of ATP are produced by each molecule of oxygen consumed in respiration, this result is consistent with the theory that respiration con- tributes energy to photosynthesis in the form of the reactivity of ATP and is also consistent with the requirement discussed earlier, of about one quantum for each molecule of ATP formed by burn- ing photochemically produced reducing agent. The relationships of energy transfer in respiration and in photosynthesis are shown in Figure 5. It will be seen that in this scheme the principal "innovations" required for photosynthesis as compared with respiration are the photochemical "battery" and the use of perhaps two specialized electron carriers, thioctic acid and cytochrome /. As more is known about details of the 66 PHOTOSYNTHESIS energy-transferring processes, we may expect that additional special steps will be found. References 1. Allen, F. L., Doctoral Thesis, University of Chicago, Chicago, Illinois, 1953. 2. Arnon, D. I., M. B. Allen, and F. R. Whatley, Nature, 174, 394 (1954). 3. Barltrop, J. A., P. M. Hayes, and M. Calvin, J. Am. Chem. Soc, 76, 4348 (1954). 4. Bassham, J. A., A. A. Benson, L. D. Kay, A. Z. Harris, A. T. Wilson, and M. Calvin, J. Am. Chem. Soc., 76, 1760 (1954). 5. Bassham, J. A., K. Shibata, and M. Calvin, Biochim. et Biophys. Acta, 17, 332 (1955). 6. Benson, A. A., M. Calvin, V. A. Haas, S. AronoflF, A. G. Hall, J. A. Bassham, and J. W. Weigl, in J. Franck and W. E. Loomis, eds.. 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BARKER, Department of Plant Biochemistry, University of California, Berkeley. California Early interest in bacterial fermentations was stimulated mainly by a need to determine the chemical changes occurring in food, soil, and other materials under anaerobic conditions or to discover and produce compounds that might have industrial applications. Abundant information on these aspects of fer- mentation has accumulated over the years. More recently, the center of interest has shifted to the analysis of the chemical mechanism of fermentations, since anaerobic bacteria frequently provide relatively simple and convenient systems for the study of basic metabolic processes. The usefulness of bacteria for metabolic studies is dependent in part upon two characteristic properties, the high rate and the extraordinary degree of specialization of their energy-generating mechanisms. These properties are perhaps even more highly developed in anaerobic than in aerobic bacteria. They facilitate the analysis of problems of intermediary metabolism by providing a biological material that is relatively free of complicating side reactions. Although individual species use highly specialized catabolic reactions, anaerobic bacteria as a group possess the ability to 70 BACTERIAL FERMENTATIONS attack a great variety of substrates including carbohydrates, polyalcohols, amino acids, purines, pyrimidines, and many organic acids. Consequently they provide a wide range of specialized catabolic processes for study. Fermentation Patterns Not all organic compounds are fermentable. The question arises as to why some compounds are utilized by anaerobic bacteria and others are not. No answer is possible in terms of molecular structure because the fermentability of a compound depends both on its structure and on the enzymatic make-up of the organism to which it is offered. A partial answer can be given only in terms of the nature of the reactions which a com- pound can undergo in a particular enzymatic system. An essential but not always sufficient requirement for fermentability is that the compound or products derived from it must be able to serve both as a reductant and as an oxidant. Furthermore, the potential difference between the oxidant and reductant systems must be great enough (^0.25 v.) to provide the energy necessary to synthesize the various structural and functional components of the cell from simple molecules. Since most biologically important organic compounds are susceptible to enzymatic oxidation, the more unique requirement for fer- mentability is the formation of a suitable oxidant system. The oxidizing and reducing systems of bacterial fermenta- tions are provided in several more or less distinct ways. In the simpler fermentations the substrate itself or a phosphorylated derivative is both oxidized and reduced. Examples of this are the dismutation of pyruvate to lactate, acetate, and carbon dioxide by some lactic acid bacteria, and the fermentation of glycerol by Escherichia freundii, in which the oxidation of glycero- phosphate to dihydroxyacetonephosphate and other subsequent products is coupled with the reduction of glycerol to trimethylene glycol (22). In a few fermentations the substrate is converted to two different compounds, one of which is oxidized and the 71 H. A. BARKER Other reduced. This is true in sugar fermentations by lactic acid bacteria which produce glycerol. The dihydroxyacetonephos- phate initially derived from carbons 1 to 3 of glucose presumably is reduced, and the glyceraldehyde initially derived from carbons 4 to 6 is oxidized. A fermentation pattern more frequently encountered is that in which part or all of the substrate, usually after some prepara- tory reactions, is oxidized and then is transformed into an hydro- gen acceptor. The simple lactic acid fermentation of glucose is of this type; glyceraldehydephosphate is oxidized and the product is converted to pyruvate, which is reduced to lactate. A variation of this pattern is known to occur in two fermentations in which the reduction precedes rather than follows the oxidation in the path of substrate degradation. This situation is encoun- tered in the fermentations of uric acid (30) and of orotic acid (18). In the former, the first step is the reduction of uric acid to xanthine, which is probably coupled with oxidation of glycine and pyruvate derived from xanthine. In the orotic acid fer- mentation, an initial reduction of orotic acid to dihydroorotic acid is coupled with the oxidation of an as yet undetermined compound. Besides the true fermentations just described, several other closely related catabolic processes sometimes referred to as "anaerobic oxidations" are utilized by anaerobic bacteria. These processes are similar to the true fermentations in that they provide energy for growth, and they frequently produce acids, gases, and odors characteristic of fermentations. They differ from true fermentations in that two major substrates are required, one to serve as an oxidant, the other as a reductant. The latter is usually an organic compound, although hydrogen gas and carbon monoxide are used as reductants by some species. The oxidant may be either an organic or an inorganic compound according to the nature of the organism. The best known example of the use of organic oxidants is in the so-called Stickland reaction (23) catalyzed by Clostridium sporogenes and several other Clostridia. In this reaction an amino acid such as alanine or 72 BACTERIAL FERMENTATIONS valine is oxidized, and another amino acid such as glycine or proline is reduced. The main inorganic oxidants used by anaerobic bacteria are nitrate, sulfate, and carbonate. The ability to use one of these compounds as a major oxidant is generally restricted to specialized groups of bacteria. Nitrate is reduced to nitrous oxide and nitrogen by denitrifying bacteria, sulfate is converted to hydrogen sulfide by sulfate-reducing bacteria, and carbon dioxide is reduced either to methane by the strictly anaerobic methane-producing bacteria (32) or to acetic acid by organisms such as C. aceticum (37) and C. thermoaceticum (38). Inorganic oxidants are advantageous in that they make possible the utiliza- tion of a wider variety of organic compounds, and the more complete oxidation of individual substrates, than is possible in a true fermentation. Selection of Organisms The selection of an organism capable of attacking a given compound or performing a particular reaction sequence can often be made by consulting a reference book on systematic bacteriology. However, because bacteriologists have generally shown a strong preference for the use of a limited number of substrates, of which the sugars are most prominent, it sometimes happens that no organism is known which possesses a highly developed ability to attack a particular compound in which an investigator is interested. Under these circumstances a suitable organism frequently may still be obtained by use of the enrich- ment culture method. The advantages of the enrichment culture method, origi- nally developed by Winogradsky and Beijerinck in the last century, appear not to be widely recognized; certainly, the method has not been applied as extensively as might be desirable. The method depends on the principle that organisms capable of decomposing a given compound can be obtained from a mixed population such as that in soil by using a culture medium in 73 H. A. BARKER which the compound in question constitutes the main energy source. In such a medium only organisms that can muhiply at the expense of the added substrate become numerous. Aerobic or anaerobic species can be selected by supplying or removing oxygen, and other conditions such as the nitrogen source, the pH, or the temperature may be varied so as to favor specific groups of bacteria. Bymaking several transfers in the appropriate medium, organisms with the desired substrate specificity and environmental requirements can be "enriched" to the extent that their isolation in pure culture can be achieved by conventional methods. The application of the enrichment culture method to the study of the fermentation of nitrogenous compounds, for example, has resulted in the isolation of several previously unknown bacteria that are potentially useful for metabolic studies. With uric acid as an enrichment substrate under anaerobic conditions, two closely related purine-fermentating bacteria, Clostridium acidi-urici and C. cylindrosporum, can be isolated from soil (3). These bacteria show a high degree of biochemical specialization, since they decompose uric acid, xanthine, and guanine with great vigor but do not attack a variety of other common sub- strates (2). Enrichment cultures with orotic acid have yielded an organism, Zymobacterium oroticum, which has been used to study the enzymatic synthesis and degradation of the pyrimidine ring (18,35). Other bacteria fermenting uracil, thymine, or allantoin have been obtained by the same method. A number of amino acid fermenting bacteria have also been isolated from enrichment cultures. Examples of such organisms are Clostrid- ium tetanomorphum, which attacks histidine and glutamate (34), C. propionicum, which ferments alanine, serine, and threonine (8), and Diplococcus glycinophilus, which uses only glycine and certain of its di- and tripeptides (8). Many similarly specialized bacteria, fermenting other com- pounds, undoubtedly can be obtained by the enrichment method. It is a useful tool with which to isolate organisms favorable for the study of a variety of biochemical reactions. The remainder of this article will be devoted to a discussion 74 BACTERIAL FERMENTATIONS of the way in which our knowledge of specific aspects of some bacterial fermentations has been arrived at. Initial Stages of Carbohydrate Fermentation One of the most significant developments in the field of fermentation biochemistry in the past few years has been the rec- ognition of the existence of several nonglycolytic pathways of car- bohydrate breakdown. Some indications of nonglycolytic path- ways were obtained long ago by balance experiments, but only since the application of tracer techniques has the evidence for such pathways become conclusive and generally been recognized. Two fermentative bacteria have been shown to use pre- dominantly nonglycolytic pathways, namely Leuconostoc mesen- teroides and Pseudomonas lindneri. Leuconostoc mesenteroides catalyzes a so-called heterolactic fermentation of glucose, the main products being equimolar amounts of lactic acid, ethanol, and carbon dioxide. The significant feature of this fermentation, from the point of view of its mechanism, is the constancy in the yields of the three products. In other bacterial fermentations giving the same products, the ratio of lactate to ethanol, for example, varies considerably with pYi and other environmental factors. In the Leuconostoc fermentation, on the contrary, half of the glucose is always converted to lactate and half to ethanol and carbon dioxide. This result is inconsistent with the glycolytic mecha- nism, in which both halves of the glucose molecule are funneled through a common intermediate, pyruvate, which can be converted either to lactate or to ethanol. More definitive evidence for a nonglycolytic mechanism of glucose fermentation in Leuconostoc was obtained by Gunsalus and Gibbs (14). They found that the fermentation of glucose- l_Ci4 gives labeled carbon dioxide, and glucose-3,4-C^^ gives carboxyl-labeled lactate and ethanol-l-C^l Their data indicate that the carbon dioxide is derived from glucose carbon 1, the methyl and carbinol groups of ethanol from glucose carbons 2 75 H. A. BARKER and 3, respectively, and the lactate carbons, starting with the carboxyl group, from carbons 4, 5, and 6 of glucose. The detailed mechanism of glucose fermentation by Leuconostoc has not yet been worked out, but there is considerable evidence that glucose-6-phosphate and 6-phosphogluconate are intermediates. The alcoholic fermentation of P. lindneri differs from that of yeast in respect to the fate of the first three carbons of glucose (13). Whereas in yeast glucose carbons 1 and 2 are converted to ethanol and carbon 3 to carbon dioxide, in the P. lindneri fermentation carbon 1 goes to carbon dioxide and carbons 2 and 3 to ethanol. The carbinol carbon of ethanol is derived from carbon 2 of glucose, in contrast to the Leuconostoc fermenta- tion in which the methyl carbon of ethanol comes from the carbon 2 of glucose. The carbon distribution pattern of the P. lindneri fermentation is sufficiently similar to that observed in glucose oxidation by Pseudomonas saccharophila to suggest that the underlying mechanisms of the two processes may be the same. Glucose-6-phosphate, 6-phosphogluconate, and 2-keto, 3-deoxy, 6-phosphogluconate have been shown to be intermediates in glucose breakdown by P. saccharophila (11,20). Two other fermentative bacteria that use nonglycolytic mechanisms to some extent are Escherichia coli and Propioni- bacterium pentosaceum. E. coli possesses enzymes catalyzing both the glycolytic (10) and the nonglycolytic ribulose-phosphate (29,31) mechanisms of glucose breakdown. The available evidence indicates that the glycolytic path is used for anaerobic decomposition of sugar, whereas both paths are used in the oxida- tion of glucose. The experiments of Cohen (9) with glucose- 1-G^^ indicate that at least 14 to 37 per cent of the glucose decomposed aerobically is metabolized via the pentose pathway. The remainder of the glucose presumably is oxidized by the glycolytic path, although specific and conclusive evidence for this has not been obtained. Propionic acid bacteria probably use both glycolytic and nonglycolytic pathways of glucose fermentation to a significant extent. Evidence for the glycolytic pathway includes demon- 76 BACTERIAL FERMENTATIONS strations of the phosphorylation of glucose by ATP (4) and the conversion of glucose or fructose- 1,6-diphosphate to phospho- glycerate by dried or toluene-treated cell suspensions (36), and the conversion of phosphoglycerate to the normal fermentation products by proliferating cells. More direct evidence for the distinctive steps of the glycolytic pathway, the formation of fructosediphosphate and its conversion to triose phosphate by the aldolase reaction, is required, particularly in view of the fact that all previous studies with propionic acid bacteria have been done with crude enzyme preparations. Alternate inter- pretations of the experimental data are therefore possible. For example, the observation that toluene-treated cell suspensions converted fructose- 1,6-diphosphate to phosphoglycerate in the presence of fluoride and an oxidant, does not definitely establish the existence of the aldolase reaction. An alternative inter- pretation is that fructosediphosphate is converted to glucose-6- phosphate which is oxidized to phosphoglycerate via phospho- gluconate, pentose phosphates, and glyceraldehyde phosphate. The recent tracer experiments of Leaver and Wood (17) have demonstrated rather conclusively that the glycolytic path is not the only mechanism of glucose fermentation by propionic acid bacteria. The fermentation of glucose-l-C^'* gave carbon dioxide with a higher specific activity than that of any carbon of the other products. The quantitative data indicate that at least 20 per cent and possibly considerably more of the glucose is decomposed by oxidation of carbon 1 to carbon dioxide, as would occur in a nonglycolytic pathway. The fermentation of glucose-3,4-C^^ resulted in the appearance of C^^in noncarboxyl positions of acetate, propionate, and succinate. This result, when considered in conjunction with other information concern- ing the propionic acid fermentation, is inconsistent both with a glycolytic pathway and with the Leuconostoc mesenteroides and ribose phosphate pathways of glucose breakdown. The isotope distribution data can be interpreted in terms of glucose oxidation by the 2-keto-3-deoxy-6-phosphogluconate pathway of Pseudo- monas saccharophila (20). However, no specific information is 77 H. A. BARKER available concerning the occurrence of this pathway in propionic acid bacteria. The glycolytic pathway is probably used as a fermentation mechanism by several bacteria, in addition to E. coli. For example, several reactions of this pathway have been demon- strated with Streptococcus faecalis (24), particularly the formation and decomposition of fructose diphosphate. Clostridium perfringens has been shown to contain the enzyme aldolase, indicative of a glycolytic mechanism (1). With several other bacteria, such as C. thermoaceticum (39), Lactobacillus casei (12), and Butyribacterium rettgeri (25), the distribution patterns of C^"* in products obtained from the fermentation of C^^-labeled glucose indicate a pre- dominantly glycolytic pathway, although this has not yet been verified by critical enzymatic experiments. The examples given above demonstrate that at least three different pathways exist for the anaerobic decomposition of glucose to three-carbon compounds by bacteria. There is no reason to believe that these are the only such pathways. Of the many anaerobic bacteria that are known, only a very few have been studied extensively enough so that any definite conclusion can be reached concerning their mechanisms of glucose decom- position. Also virtually nothing is known about the energy- utilizing mechanisms that are associated with nonglycolytic sugar decomposition. Only a good beginning has been made in the study of this fundamental aspect of bacterial fermentations. The discovery of several alternate pathways of sugar fermentation and other biochemical processes has had a con- siderable effect on the comparative biochemical point of view. Not long ago, many microbiologists in particular believed that all bacteria are built on essentially the same basic metabolic pattern. The conspicuous differences in fermentation products which were known to exist were thought to be attributable to differences in relative rates of various reactions or to the omission or addition of specific enzymatic steps. The possibility that a given process, such as the conversion of glucose to pyruvate, might occur by more than one mechanism was not seriously 78 BACTERIAL FERMENTATIONS considered; the existence of two such pathways appeared superfluous and even unreasonable. Therefore the discovery of various alternative pathways for single processes has required a revision of the concept of a basic metabolic pattern in terms of processes rather than in terms of specific chemical mechanisms. It may also be noted that alternate metabolic pathways provide a useful set of characters for the analysis of phylogenetic relationships among microorganisms. Past attempts to deduce phylogenetic relationships from gross inorphology or fermenta- tion product patterns have not been particularly successful, in part because the numbers of characters available were too restricted. This difficulty at least can be overcome by the comparison of complex metabolic pathways which provide many enzymatic steps linked together in process patterns that probably represent the culmination of long sequences of evolutionary development. Butyric Acid Fermentation Clostridium kluyveri is a good example of an anaerobic bacterium that has been useful in the study of a fundamental biochemical process, namely, the synthesis of fatty acids (5). This organism was discovered more or less fortuitously while making enrichm.ent cultures for methane-producing bacteria with ethyl alcohol as the sole organic substrate. Examination of the fermentation products in such cultures revealed that butyric and caproic acids were frequently formed in large yields along with acetic acid, and were always associated with the presence of a Clostridium later called C. kluyveri. The formation of these acids from ethyl alcohol provided direct confirmation for the old theory that fatty acids containing an even number of carbon atoms are built up from a C2 compound. Further study of the substrate requirements for butyrate synthesis by pure cultures of C. kluyveri demonstrated that both ethanol and acetate are essential for the process, which occurs stoichiometrically according to the equation CH3CH2OH + CH3COOH > CH3CH2CH2COOH + H2O 79 H. A. BARKER Tracer experiments indicated that the ethanol is oxidized to the acetate level before being converted to butyrate. Thus acetate or an activated derivative was identified as a major precursor of butyrate. Later, Lynen's acetyl-coenzyme A (19), formed from acetaldehyde and coenzyme A by a DPN-dependent oxidation, was shown to be the activated form of acetate. Even before the isolation of acetyl-CoA by Lynen, the evidence for the existence of such a compound was greatly strengthened by Stadtman's discovery that the exchange of in- organic phosphate with acetyl phosphate in C. kluyveri extracts is catalyzed by an enzyme, phosphotransacetylase, which is coenzyme A dependent (33). This exchange could be most easily interpreted by means of the following reaction acetyl phosphate + CoA > acetyl-CoA + phosphate which was subsequently shown to occur. The phosphotrans- acetylase reaction has been very useful in enzymatic studies of acetate metabolism, since it provides a convenient method of forming acetyl-CoA. A central problem in the metabolism of fatty acids was the identity of the intermediates between acetate and butyrate. Early investigations of fatty acid metabolism in animals sug- gested that acetoacetate and j8-hydroxybutyrate might be involved, but conclusive evidence for or against the participation of these compounds was not forthcoming until the development of cell-free enzyme systems that metabolize fatty acids. With extracts of C. kluyveri, acetoacetate, /3-hydroxybutyrate, and other possible C4 compounds in the same oxidation states were shown definitely not to be intermediates in the interconversion of ace- tate and butyrate (16). This and other evidence led to the development of the idea that the intermediates are not simple C4 molecules but are C4-coenzyme compounds. This hypothesis has been fully confirmed by the discovery of the role of the acetyl, butyryl, crotonyl, j8-hydroxybutyryl, and acetoacetyl derivatives of coenzyme A in both animal and bacterial systems (19,21,33). 80 BACTERIAL FERMENTATIONS Although many of the steps in the enzymatic conversion of ethanol and acetate to butyrate and caproate are now known, our understanding of the role of this process in the energy transformation of the bacteria is very inadequate. Presumably the formation of the G4 and Cs fatty acids, which involves a free- energy change of approximately 12 kcal. per mole of ethanol consumed, constitutes the main source of energy for synthetic activities of the organism. This implies that the catabolic reaction should result in a net formation of high-energy phos- phate or other suitable energy donor. But as yet there is no evidence that this occurs. The oxidation of acetaldehyde to acetyl-CoA yields a high-energy thioester bond which can be converted to a high-energy phosphate bond by the phosphotrans- acetylase reaction. However, the thioester bond is not available for this purpose, since it is required for the formation of aceto- acetyl-CoA from acetyl CoA. There appear to be two ways in which useful energy might be provided during the C. kluyveri fermentation. One is by an oxidation of acetaldehyde which is not coupled with butyrate synthesis but with the formation of hydrogen gas as illustrated in the following reaction, where Pi represents phosphate: CH3CHO + Pi + ADP > GH3COOH + ATP + H2 It should be noted that hydrogen is formed in appreciable amounts during the C. kluyveri fermentation. The free-energy change is unfavorable (approximately 4 kcal.) for the above reaction to proceed from left to right as written. However, by coupling this reaction with strongly exergonic reactions of ATP, such as the hexokinase reaction, which are involved in the synthesis of cellular constituents, the over-all reaction would be slightly exergonic (approximately —2 kcal.). A second possible mechanism for net ATP formation in the C. kluyveri fermentation is an oxidative phosphorylation de- pendent on electron transport from ethanol and acetaldehyde to the unsaturated fatty acid electron acceptors such as crotonyl- CoA. The potential difference between the ethanol-acetalde- 81 H. A. BARKER hyde and the butyryl-CoA-crotonyl-CoA system (21) appears to be of the order of 0.2 v., which is more than enough to permit the formation of one high-energy phosphate bond from ortho- phosphate. Such a coenzyme-hnked phosphorylation could account for the importance of butyrate and caproate synthesis in the metabolism of C. kluyveri. However, as yet there is no evidence for such a mechanism. In fact, it has not been possible to observe a reduction of crotonyl compounds by reduced DPN and TPN, which are formed in the oxidation of ethanol and acetaldehyde. Purine Fermentations The fermentation of purines by C. acidi-urici and C. cylindro- sporum presents some interesting and as yet partially unsolved biochemical problems. The main products of the fermentation of uric acid, xan- thine, or guanine are ammonia, carbon dioxide, and acetate, sometimes accompanied by small amounts of formate and glycine (2,27) . Early experiments with cell suspensions indicated that the mechanism of the purine fermentation is quite different from that of uric acid oxidation via allantoin in animals and aerobic bacteria. This conclusion was based in part on the observation that neither allantoin nor urea is decomposed under conditions in which uric acid is rapidly fermented. The first definite indication of the path of uric acid break- down was the discovery that glycine is formed in appreciable amounts and is also decomposed when uric acid is simultaneously available to the organism (2). The dependence of glycine decomposition on the presence of uric acid suggested some sort of interaction between the two substances. This was further supported by the observation that certain cell suspensions of C acidi-urici exhibit a conspicuous lag in uric acid decomposition, which can be eliminated completely by the addition of glycine. Later work (30) suggests that the oxidation of glycine is coupled with a reduction of uric acid to xanthine. 82 BACTERIAL FERMENTATIONS The formation of glycine and formate from purines points to a similarity between tlie mechanisms of the bacterial fermenta- tion and the synthesis of purines in animals. This similarity has been further defined by the use of tracer methods (15,26). Nitrogen atoms in the 1, 3, and 9 positions of the purine have been shown to be converted to ammonia, and the nitrogen in position 7 appears in glycine. Carbon from positions 2 and 6 goes to carbon dioxide, from positions 4 and 5 to the carboxyl and methylene carbons of glycine, and from position 8 to formate. The only conspicuous difference between the fermentation and synthetic processes with respect to the tracer data is in the fate or source of the carbon in position 2. In the uric acid of the pigeon this carbon atom is derived from formate, whereas in the fermentation it is converted to carbon, dioxide by a path not involving formate. This suggests that the purine which is actu- ally degraded by the bacterial system, as contrasted with the purine added as a substrate, is more oxidized in the 2 position than is the hypoxanthine ribotide which appears to be the first purine derivative synthesized from nonpurine precursors in animals (7). Several types of evidence, which will not be given here, indicate that uric acid, guanine, and hypoxanthine are converted to xanthine before the purine ring structure is disrupted. The decomposition of xanthine has been studied with crude cell-free extracts (6,27,30), and has been shown to proceed in accordance with the following equation 1 xanthine + 6H2O > 3 ammonia + 2 carbon dioxide + 1 formate + 1 glycine which represents a nonoxidative process. Unlike intact cells, the cell-free extracts used in these experiments do not form appreciable amounts of acetate. A question of special interest in xanthine decomposition is the point of attack on the purine molecule. Previous studies on purine synthesis in birds indicated that the ribotide of 4-amino- 5-carboxamidoimidazole combines with "formate" to yield a 83 H. A. BARKER hypoxanthine derivative. If a similar but reverse process occurs in the fermentation of xanthine, an initial attack on the bonds between the 1,2 or 2,3 positions in the purine would be required. Actually all available evidence is against an initial splitting of these bonds. For example, 4-amino-5-carboxamidoimidazole is not attacked nor does it accumulate under conditions favorable HN-CO HN-CO HgN COOH 0^ C-^^-CO -^iU °9 ^^^CH H,0 OC C-N<. HN-C-NH^ HN-C-NH' *- HN-C-NH" URIC ACID XANTHINE 4-URE1D0-5-CARB0XY- IMIDAZOLE -NH3 -CO2 H N-CH '^ COOH 2NH3+ I +HCOOH^^ CH-N^ ;^ f'^^CH COOH H^N-C-NH' H2N-C-NH' _^ 4-AMlNO-IMIDA- 4- AMI N0-5-CARB0XY- ZOLE IMIDAZOLE r CH,0H CH, CH, ^^ I 2 -NH, I 3 .2H I 3 +C0- CHNH2 ^ CO 1- COOH 2 COOH COOH Fig. 1. Fermentation of uric acid. The solid arrows indicate known reactions, the dotted arrows postulated reactions. for xanthine decomposition. Moreover, in the presence of suit- able inhibitors the major product of xanthine decomposition by extracts has been identified as 4-ureido-5-carboxyimidazole (28) which is formed by a rupture of the bond between the 1 and 6 positions. The ureido group of this compound is next attacked enzymatically with the formation of ammonia, carbon dioxide, and 4-amino-5-carboxyimidazole (27). The latter is decarbox- ylated and then the imidazole ring of the resulting 4-amino derivative is cleaved to give glycine, ammonia, and formate in the cell-free system. This is undoubtedly a multistep process, the details of which have not yet been worked out. 84 BACTERIAL FERMENTATIONS In the fermentation of purines by living cultures of C. acidi-urici, glycine and formate do not accumulate in considerable amounts, whereas acetate is a major product. Tracer experi- ments have established that both glycine and formate are con- verted in part to acetate. Formate carbon goes into the methyl group of acetate. The methylene carbon of glycine enters both carbons of acetate, whereas the carboxyl carbon of glycine is converted mainly to carbon dioxide. The mechanism of acetate formation from glycine and formate has not been established definitely, but a pathway involving serine is indicated by in- direct evidence (30). Serine is rapidly converted to pyruvate by cell-free extracts and pyruvate is oxidized to acetate and carbon dioxide. Also glycine can be oxidized to acetate. A schematic representation of uric acid fermentation by C. acidi-urici and C. cylindrosporum as presently understood is given in Figure 1. Many aspects of the purine fermentation remain to be elucidated. The steps in the conversion of 4-amino-imidazole to glycine are not known. It is likely that this process involves an "active formate" which facilitates the conversion of glycine or a glycine precursor to serine. Energy useful for synthetic purposes may also be generated during the conversion of xan- thine to glycine ; otherwise it is difficult to see what purpose this process serves. It is unlikely that this reaction sequence serves only to provide precursors of serine and pyruvate, because these compounds cannot replace purines as fermentation substrates. At present there is no indication of the participation of purine or imidazole nucleotides in the breakdown of purines, but in view of the general similarity between the mechanisms of the fermentation and purine syntheses in animals, a possible role of nucleotides in the purine fermentation should be investigated more closely. References 1. Bard, R. C, and I. C. Gunsalus, J. Bacterial., 59, 387 (1950). 2. Barker, H. A., and J. V. Beck, J. Biol. Chern., 747, 3 (1941). 85 H. A, BARKER 3. Barker, H. A., and J. V. Beck, J. Bacterial., 43, 291 (1942). 4. Barker, H. A., and F. Lipmann, J. Biol. Chem., 779, 247 (1949). 5. Barker, H. A., Harvey Lectures, Ser. 45, 242 (1949-50). 6. Bradshaw, W., and J. V. Beck, Bacterial. Proc, 86 (1953). 7. Buchanan, J. M., Phasphorus Metabolism, 2, 406 (1952). 8. Cardon, B. P., and H. A. Barker, Arch. Biochem., 12, 165 (1947). 9. Cohen, S. S., Nature, 168, 746 (1951). 10. Elsden, S. R., Enzymes, 2, part 2, 791 (1952). 11. Entner, H., and M. Doudoroff, J. Bial. Chem., 196, 853 (1952). 12. Gibbs, M., R. Dumrose, F. A. Bennett, and M. R. Bubeck, J. Biol. Chem., 184, 545 (1950). 13. Gibbs, M., and R. D. DeMoss, J. Biol. Chem., 207, 689 (1954). 14. Gunsalus, I. C., and M. Gibbs, J. Bial. Chem., 194, 871 (1952). 15. Karlsson, J. L., and H. A. Barker, J. Biol. Chem., 178, 891 (1949). 16. Kennedy, E. P., and H. A. Barker, J. Biol. Chem., 191, 419 (1951). 17. Leaver, F. W., and H. G. Wood, J. Cellular Camp. Physiology, 41, 225 (1952). 18. Lieberman, I., and A. Kornberg, Biochem. et Biophys. Acta, 12, 223 (1953). 19. Lynen, F., Federation Proc, 12, 683 (1953). 20. MacGee, J., and M. Doudoroff, Bacterial. Proc, 108 (1954). 21. Mahler, H. R., Federation Proc, 12, 694 (1953). 22. Mickelson, M. N., and C. H. Werkman, J. Bacterial., 39, 709 (1940). 23. Nisman, B., Bacertiol. Revs., 18, 16 (1954). 24. O'Kane, D. J., and W. W. Umbreit, J. Biol. Chem., 742, 25 (1942). 25. Pine, L., V. Haas, and H. A. Barker, J. Bacterial., 68, 227 (1954). 26. Rabinowitz, J. R., unpublished data. 27. Rabinowitz, J. R., and H. A. Barker, Federation Proc, 12, 255 (1953). 28. Rabinowitz, J. R., and W. E. Pricer, Jr., Federation Proc, 73, 278 (1954). 29. Racker, E., Federation Proc, 7, 180 (1948). 30. Radin, N. S., and H. A. Barker, Proc. Natl. Acad. Sci. U. S., 39, 1196 (1953). 31. Scott, D. B. M., and S. S. Cohen, Biochem. J. {London), 55, 33 (1953). 32. Stadtman, T. C, and H. A. Barker, J. Bacterial., 67, 67 (1951). 33. Stadtman, E. R., Record Chem. Progr. {Kresge-Hooker Sci. Lib.), 75, 1 (1954). 34. Wachsman, J. T., and H. A. Barker, J. Bacterial., 69, 83 (1955). 35. Wachsman, J. T., and H. A. Barker, J. Bacterial., 68, 400 (1954). 36. Werkman, C. H., R. W. Stone, and H. G. Wood, Enzymolagia, 4, 24 (1937). 37. Wieringa, K. T., Leeuwenhoek, J. Microbiol. Serai, 6, 251 (1939-40). 38. Wood, H. G., J. Biol. Chem., 194, 905 (1952). 39. Wood, H. G., J. Biol. Chem., 199, 579 (1952). 86 SOME ASPECTS OF VITAMIN AND GROWTH FACTOR RESEARCH ESMOND E. SNELL, Biochemical Institute, University of Texas, Austin. Texas The fifteen years since 1940 have been marked by an un- precedented rate of increase in our knowledge of the nature and metabolic role of vitamins and similar growth factors. The perfection of chromatographic methods of purification, together with the partial substitution of rapid microbiological assays for the more tedious bioassay procedures with higher animals, has contributed much to this increase. Detailed accounts of the current status of knowledge of the vitamins have appeared (54,57,81); here no such account will be attempted. Rather shall we be content to emphasize a few aspects of recent nutri- tional research (and consequently slur others) and their implica- tions for future progress in this field. Microbiological Techniques in Vitamin Research Some fourteen years ago Peterson (43) and Williams (80) emphasized the growing importance of microorganisms as tools in nutritional research by pointing out that work with micro- organisms had resulted in discovery of certain of the B-vitamins (pantothenic acid, biotin) and in the first demonstration of the 87 ESMOND E. SNELL nutritional importance of several others (/?-aminobenzoic acid, inositol, nicotinic acid). Since 1942, as illustrated in Table I and discussed more fully below, microorganisms (chiefly those of a single group, the lactic acid bacteria) have played a dominant role as test organisms in the discovery and isolation of new vita- mins and related factors. But the discovery, isolation, and chemical characterization of a new vitamin represent only the more glittering facets of a many-sided problem. How is the vitamin distributed in nature? In what forms does it occur? What essential role does it play in metabolism? Investigation of these and related questions also has been immensely furthered by use of microorganisms. Since its introduction by Snell and Strong (71) in 1939 the technique of comparing the growth response of microorganisms to tissue extracts and to pure vitamin as a quantitative method for estimation of vitamins in natural materials (reviews, 2,64,65) has become fully accepted and has increased greatly our knowl- edge of the distribution of the vitamins in nature. Complica- tions sometimes arise in such assays from the presence of previ- ously unsuspected vitamin derivatives or of metabolically related substances, and the unraveling of such difficulties can provide information relative to the latter two questions posed above. The study of metabolic roles of the vitamins also has been facilitated greatly through use of artificially induced nutritional mutants of microorganisms (reviews, 13,36) and through detailed study of the action of inhibitors structurally related to vitamins — inhibition analysis (reviews, 58,81). It is the thesis of this essay that bacterial nutrition still has much to contribute to the study of nutrition of higher animals. Some directions in which we may look for such contributions will be pointed out in the sequel. Vitamins and Growth Factors Identified since 1942 A brief and incomplete review of progress in recognition of vitamins and growth factors since the similar review by Peterson 88 VITAMIN AND GROWTH FACTOR RESEARCH in 1941 (43) will serve to illustrate the outstanding role played by investigations with microorganisms. A tabulation of vitamins and growth factors discovered, isolated, or synthesized since 1942, together with the test organ- isms employed during their isolation or characterization, is given in Table I. The difficulties in assigning individual names and dates to the discovery of vitamins is obvious especially where, as with folic acid and vitamin B12, approaches from several different directions with different test organisms have been made, and where the specificity of assay procedures has been improved over a period of years by several different investigators. The popular tendency to assign a given scientific advance to a specific individ- ual, although sometimes justified (depending upon the magni- tude of the advance), more often represents an injustice to other workers whose important contributions remain thereby un- acknowledged. So it is with discovery, isolation, and character- ization of the vitamins — never yet a one-man job ! The names associated with the assay methods of Table I, therefore, represent not necessarily the original discoverers of the growth factor but rather the devisers of the first reasonably specific assay pro- cedures that permitted real progress toward isolation and char- acterization of that growth factor. PYRIDOXAL AND PYRIDOXAMINE Discovery of these two forms of vitamin Be resulted from an attempt to devise a quantitative microbiological method for the determination of pyridoxine, which at that time was considered synonymous with vitamin Be. When lactic acid bacteria were the test organisms and pyridoxine the reference standard, impossibly high values for the "pyridoxine" content of natural materials were obtained (73). Obviously, substances other than pyridoxine were promoting growth in the vitamin Bg- deficient medium. The observation (61) that the growth- promoting activity of pyridoxine increased upon heating with the growth medium and that pyridoxine itself was essentially in- active in promoting growth (61,73) suggested that closely related 89 ESMOND E. SNELL TABLE I Progress in Recognition of Vitamins and Growth Factors, 1942-1955 I. Substances known to serve as vitamins for both animals and microor- ganisms. A. Pyridoxal and pyridoxamine 1. Bioassay organisms used in detection: Streptococcus faecalis {lactis) R: Snell, Guirard, and Williams, 1942 (73) 2. Characterization and synthesis: Snell, 1944 (62); Harris, Heyl, and Folkers, 1944 (20) B. Folic acid (pteroylglutamic acid) and its conjugates 1. Bioassay organisms used in isolation and characterization: Lactobacillus casei: Snell and Peterson, 1939, 1940 (69) Streptococcus faecalis: Mitchell, Snell, and Williams, 1941 (37) Chicks: Hogan and Parrott, 1939 (23) 2. Isolation Pfiffner, Binkley, Bloom, Brown, Bird, Emmett, Hogan, and O'Dell, 1943 (45) Hutchings, Stokstad, Bohonos, and Slobodkin, 1944 (26) 3. Characterization and synthesis Angier and co-workers, 1946 (1) C. Folinic acid (leucovorin) and its conjugates. 1. Bioassay organisms used in isolation and characterization: Leuconostoc citrovorum: Sauberlich and Baumann, 1948 (56) Streptococcus faecalis and Lactobacillus casei: Bond, Bardos, Sibley, and Shive, 1949 (4) 2. Characterization and synthesis Pohland, Flynn, Jones, and Shive, 1951 (47) Cosulich, Roth, Smith, Hultquist, and Parker, 1952 (11) 3. Isolation Kcresztesy and Silverman, 1951 (27) D. Pantetheine — Pantethine 1 . Bioassay organism used in detection : Lactobacillus bulgaricus: Williams, Hofr-J0rgensen, and Snell, 1949 (82) 2. Purification and characterization Peters, Brown, Williams, and Snell, 1953 C41) Brown, Craig, and Snell, 1950, 1953 (8) 3. Synthesis Snell, Brown, Peters, Craig, Wittle, Moore, McGlohon, and Bird, 1950 (72) 90 VITAMIN AND GROWTH FACTOR RESEARCH TABLE I (Continued) E. Biocytin 1. Bioassay organisms used in detection: Lactobacillus arabinosus and Lactobacillus casei: Wright and Skeggs, 1944 (85) 2. Isolation Wright, Cresson, Skeggs, Wood, Peck, Wolf, and Folkers, 1 952 (86) 3. Characterization and synthesis Wolf, Valiant, Peck, and Folkers, 1952 (40) F. Vitamin B12 1 . Bioassay organisms used in detection : Man: Castle, 1929 (10) Lactobacillus lactis Dorner: Shorb, 1947 (59) 2. Isolation Rickes, Brink, Koniusy, Wood, and Folkers, 1948 (53); Smith, 1948 (60) II. Microbial growth factors of undetermined nutritional significance for animals A. Lipoic acid (thioctic acid) 1. Bioassay organisms used in detection Lactobacillus casei: Guirard, Snell, and Williams, 1946 (17) Streptococcus faecalis (enzymatic): O'Kane and Gunsalus, 1947 (38) Tetrahymena geleii: Stokstad, Hoffman, Regan, Fordham, and Jukes, 1949 (78) 2. Isolation Reed, DeBusk, Gunsalus, and Hornberger, 1951 (52) Patterson, Brockman, Day, Pierce, Macchi, Hoflfman, Fong, Stokstad, and Jukes, 1951 (46) 3. Characterization and synthesis Hornberger, Heitmiller, Gunsalus, Schnakenberg, and Reed, 1952 (25) Bullock, Brockman, Patterson, Pierce, and Stokstad, 1952 (9) HI. Bacterial growth factors of dubious significance for animal nutrition Growth factor Test organism Investigators A. D-Alanine Lactic acid bacteria Snell, 1945 (63) B. Putrescine Hemophilus parainjiuenzae Herbst and Snell, 1948 m Table continued 91 ESMOND E. SNELL TABLE I {Continued) C. A^-Acctylglucosamine Lactobacillus bijidus glycosides D. D-Lactic acid (or other Lactobacillus casei a-hydroxy acids) (mutant) E. /)-Hydroxybenzoic acid Escherichia coli (mutant) F. Various peptides Lactic acid bacteria G. Thymidine and mis- cellaneous nucleosides and nucleotides H. Coprogen and Ferrichrome L Biopterin Lactic acid bacteria Pilobolus sp. C< Cf Crithidia fasciculata Gyorgy et al., 1954 (19a) Kuhn, 1952 (31) Camien and Dunn, 1953 (9a) Davis, 1950 (12) Sprince and Woolley, 1945 (77) Snell, 1945 (63) Kihara and Snell, 1952, 1955(28) Hesseltine, Pidacks, Whitehill, Bohonos, Hutchings, and Williams, 1952 (21a) Neilands, 1952 (37a) Patterson, Broquist, Albrecht, von Saltza, and Stokstad, 1955 (38a) derivatives were the active substances, and a variety of chemical treatments combined with microbiological testing showed that partial oxidation of pyridoxine to an aldehyde, or its amination to an amine, yielded highly active substances (62). Synthesis (20) of the limited number of possible structures (62) divulged the structures of two active compounds (formulas I and II), which were named pyridoxal and pyridoxamine (20,62,70). CHO (I) Pyridoxal CH2NH2 (II) Pyridoxamine This was the first instance in which one of the B-vitamins had been shown to exist in more than a single simple (i.e.. 92 VITAMIN AND GROWTH FACTOR RESEARCH unconjugated) form, and many investigators still have not adjusted themselves to the changed situation but persist in speak- ing of the "pyridoxine content" of foodstuffs (although in many foodstuffs no detectable pyridoxine is present, all of the vitamin Be being present as pyridoxal and pyridoxamine (49)) or of "pyridoxine-deficient" rations (yeast, an excellent source of vitamin Be, is pyridoxine-deficient — i.e., it contains little or no pyridoxine* (49)). If accuracy in nomenclature is a prerequisite to accuracy in thought, situations such as this, which occur fre- quently in the vitamin field (cf. vitamin A vs. vitamin A activity, folic acid vs. folic acid activity, etc.), should receive more attention. The matter is not entirely academic, for whereas pyridoxine is a very stable compound in foodstuffs, pyridoxal because of its reactive carbonyl grouping is not, and it is possible that an inaccurate nomenclature has contributed to the delay in recognition of the destruction of vitamin Be that may occur in food processing. Immediately following synthesis of pyridoxal, one coenzy- matic form of vitamin Be was recognized by Gunsalus and co- workers (19) to be pyridoxal phosphate (formula III); sub- sequently pyridoxamine phosphate (formula IV) also was dis- covered by Rabinowitz and Snell (48) . The latter product was later found to serve as an essential growth factor for certain lactic acid bacteria (e.g., Lactobacillus delbrueckii (34)), which cannot CHO CH2NH2 HO [T^ CH2OPO3H2 HO |r^CH20P03H2 HgClj^J HsCl^J (HI) Pyridoxal phosphate (IV) Pyridoxamine phosphate * This statement may appear in conflict with the reported isolation (32) of pyridoxine from yeast. This procedure has not been reported in detail; in answer to a query Professor Kuhn revealed that nitric acid was used through- out this procedure, and volunteered the opinion that the pyridoxamine originally present probably was converted (by nitrous acid) to pyridoxine during the course of the isolation. Most other isolations of pyridoxine were from rice-bran extract, in which this form of vitamin Be predominates. 93 ESMOND E. SNELL Utilize pyridoxal or pyridoxamine efficiently, and to serve also as a coenzyme in enzymatic transamination (35). FOLIC AND FOLINIC ACIDS The tangled investigational threads that met in the isolation and characterization of folic acid (formula V) have been traced .N^ ^N, CONHCHCOOH I CH2 OH ^"2 (V) Folic acid (Pteroylglutamic acid) elsewhere (54,57,44). Although the earliest observation of an experimental deficiency of this substance was in monkeys (vitamin M), the discovery failed to provide a practicable assay procedure for its isolation. Such procedures were discovered entirely independently, with chicks (vitamin Be) as the assay organism in one instance, and lactic acid bacteria (eluate factor, folic acid) in the other. The bacterial assays were used at one or another stage in all of the successful isolations. All the organisms that respond to folic acid respond similarly to folinic acid (formula VI). Thus, the original observations of CONHCHCOOH H,NrY^CH, O f' N^^N^iH^ ^NH CH2 OH I GH2 COOH CHO (VI) Folinic acid growth responses in various organisms to crude supplements included the response to both substances. Some evidence in- dicates that the amount of folinic acid in tissues surpasses the amount of folic acid. To what extent the latter is an artifact, formed from the more labile folinic acid (or the even more 94 VITAMIN AND GROWTH FACTOR RESEARCH CONHCHCOOH N N^ II I CH^ OH H ' COOH (VII) Tetrahydrofolic acid labile di- and tetrahydrofolic acids (formula VII)) during the isolation procedure, remains to be established. Pfiffner and co-workers (45) in their paper describing isolation of folic acid (vitamin Be) demonstrated clearly the existence of a more labile compound which promoted growth of Streptococcus faecalis and which closely resembled in properties those later established for folinic acid. However, the clear-cut differentiation of this latter substance required a specific assay method. This was discovered by Sauberlich and Baumann (56) who found that Leuconostoc citrovorum (more recently identified as Pediococcus cerevisiae) required extremely high levels of folic acid for growth, and then grew only slowly, but grew rapidly in the presence of small amounts of liver extracts. A second assay procedure was independently discovered by Shive and co-workers (4), who found that inhibition of 5". faecalis by a folic acid analogue was prevented much more effectively by liver extracts than could be accounted for by their folic acid content. Just as pyridoxamine and pyridoxal were earlier produced by empirical procedures from pyridoxine, and their structure clarified without their isolation from natural materials, so it proved possible to form folinic acid from folic acid by empirical procedures, isolate the active reaction product, and establish its structure (11,47). In this instance, however, two difliicultly separable diastereoisomeric modifications of the growth factor were produced, and final proof of the identity of the naturally occurring and synthetic growth factor required separation of the diastereoisomers and comparison with the product isolated from natural materials. Incomplete evidence indicates that in addition to these two substances with folic acid activity, di- and tetrahydrofolic acid 95 ESMOND E. SNELL also may occur naturally. In addition, there appear to occur also conjugates of each of these compounds, that contain up to (and possibly more than) six additional glutamic acid residues and that vary in growth activity depending upon the number of conjugated glutamic acid residues and the test organism. Which if any, of these compounds represents the coenzyme form of the vitamin is not known. The difficulty presented to the analyst by the occurrence of a vitamin in so many forms is great, and the problem of accurate and convenient assay has not been entirely solved. PANTETHEINE PANTETHINE During an attempt to culture Lactobacillus bulgaricus in a chemically defined medium this and a number of related organ- isms were found to require an unidentified substance for growth. Highly purified concentrates of the substance were prepared from CH3 I HOCH2C-CHOHCONHCH2CH2CONHCH2GH2SH GH3 (VIII) Pantetheine CH3 HOCH2-G-CHOHCONHCH2CH2CONHCH2CH2S- CH3 (IX) Pantethine O-CH2CH-CHCHOHCH-N \ 0=P-OH ^o. G=C / V O PO3H2 N^ p-^^2 I C— N 0=P-OH GH3 H O-CH2-G-GHOHCONHGH2GH2GONHGH2GH2SH GH3 (X) Goenzyme A 96 VITAMIN AND GROWTH FACTOR RESEARCH fermentation residues. It was noted that these concentrates re- placed pantothenic acid for some organisms (e.g., L. arabinosus) but not for others (e.g., Saccharomyces carlsbergensis), and, con- versely, very large amounts of pantothenic acid replaced the unidentified substance as a growth factor for L. bulgaricus. Thus the substance appeared to be a combined form of pantothenic acid, and further work revealed its structure to be that illus- trated in formulas VIII and IX. These findings came just as the structure of coenzyme A (formula X) was under active investigation, and just as Lynen had shown the acyl- transferring role of coenzyme A to take place via a sulfhydryl grouping. The postulate (8,72) that pantetheine represented the then chemically unidentified portion of coenzyme A was rapidly borne out by the enzymatic resynthesis of coenzyme A from pantetheine and adenosine triphosphate (16). This was the first recognition of the occurrence of the j3-mercaptoethylamine residue in nature. The fact that the growth factor for L. bulgaricus occurs naturally in several chromatographically distinct forms was shown to result from the presence of a variety of mixed disulfides formed by oxidative cross-linking between pantetheine and other sulfhydryl compounds (5). Just as pyridoxal or pyridoxamine and folinic acid are more closely related to the coenzyme form of these vitamins than pyridoxine or folic acid, so then is pantetheine intermediate between coenzyme A and pantothenic acid. In each case, a specific requirement for these compounds by certain organisms appears to result from inability or a markedly lowered ability to eflfect conversion a in the sequence : pvTidoxine 1 folic acid > > { pantothenic acid J It sometimes happens that conversion b is also diflficult. We have referred to the fact that for some lactic acid bacteria pyridoxamine phosphate is many hundred times more active than pyridoxamine or pyridoxal in promoting growth. Simi- larly, for a strain of Treponema pallidum neither pantothenic acid 97 pyridoxal 1 ^ fpyridoxal phosphate folinic acid[ > •^coenzyone F pantetheine J (coenzyme A ESMOND E. SNELL > nor panthetheine serves as a growth factor; panthetheine- 4 '-phosphate (formula XI, an intermediate between pantetheine and coenzyme A) or coenzyme A itself must be supplied to per- mit growth (77a), Do conditions exist in which higher animals show similar, synthetic disabilities, where the coenzymes or their more im- mediate (and more readily available) precursors would be more effective therapeutic agents than the vitamin forms of commerce? We do not know. In experimentally produced deficiency states (usually produced in young, undiseased animals) no evidence for this exists, but it would be unwise to overlook the possibility while the problems of pathology of all types, of aging, etc., are still with us. When we say that L. bulgaricus has a specific requirement for pantetheine because of an insufficient capacity on the part of the cell to convert pantothenic acid to pantetheine, it is important to understand just what is meant. Experimentally, all that one observes is that to permit growth, pantothenic acid must be supplied in the medium at several hundred times the concentra- tion that suflSces when pantetheine is supplied. But with sufficient pantothenic acid, growth does occur, showing that some of it has been converted to coenzyme A. Thus the con- version enzymes do occur, and can function. Is the conversion limited because (7) insufficient of the conversion enzyme (s) is present, or (2) because the enzyme, though present, has a lowered affinity for its substrate, or {3) because activity of the PO3H2 CH3 OCH2-CCHOHCONHCH2CH2CONHCH2CH2SH CH3 (XI) Pan tetheine-4' -phosphate CHo COOH I I HOCH2CCHOHCONHCH2CH2CONHCHCH2SH CH3 (XII) Pantothenylcysteine 98 VITAMIN AND GROWTH FACTOR RESEARCH enzyme is in some way inhibited by presence of other substances, or (4) because pantothenic acid, in contrast to pantetheine, is not readily absorbed by this organism? All of these are possibiUties, and any one of them would suffice to permit the observed result. The growth experiment by itself does not favor one explanation over the other. Without implying preference for any particular explanation in this instance, it may be useful to cite evidence showing that insufficient attention has been paid in the recent past to cell permeability as an explanation for differing activities of closely related growth factors. Current evidence (cf. 6,7) indicates that conversion of pantothenic acid (or pantoic acid) to coenzyme A occurs via the following pathway : -2H Pantoic acid Pantothenic- acid Pantothenyl- cysteine Pantetheine < Pantethine + 2H j8- Alanine Cysteine -2H + 2H CO5 ATP Pantothenyl cystine ^ . « Pantetheine- Coenzyme A < A > U U * ^ ATP 4 -phosphate Acetobacter suboxydans does not grow in the absence of one of the substances shown along the main line of this conversion. Pantoic acid and pantothenic acid have equal activity but are much less active than pantothenylcysteine, pantetheine, 4'- phosphopantetheine, or reduced coenzyme A. This could be interpreted as an inability to carry out reaction b readily. How- ever, further investigation showed that the activity of pantothenic acid (and pantoic acid), but not of pantetheine, was greatly in- creased by lowering the pYi of the medium; this increased activity approximated the increased concentration of undis- sociated pantothenic acid that resulted from the drop in pH., and the undissociated acids very nearly equalled coenzyme A in 99 ESMOND E. SNELL growth activity (7). Thus it appears that cells of A. suboxydans are relatively impermeable to the anions of pantoic and panto- thenic acids, but not to the undissociated acids. Pantothenyl- cystine and pantethine are without activity, but the reduced compounds, pantothenylcysteine (formula XII) and pantetheine, show full activity. The presence of the — SH group permits ready absorption despite presence of an ionized carboxyl group, for the activity of pantothenylcysteine is not j&H-dependent as is that of pantothenic acid, pantoic acid, or pantothenylglycine (7). This indicates that the — SH group is concerned in absorption of these compounds through the cell membrane. Are similar phenomena of importance in animal nutrition? We do not know, but fragmentary evidence suggests that they may be. Thus the conversion of pantothenic acid to coenzyme A appears at present to occur in animals by the same pathway shown above, and cell-free extracts of rat liver convert panto- thenylcysteine to pantetheine (22). Yet, whereas pantothenic acid and pantetheine have equal activities in promoting growth of rats, pantothenylcysteine has none (79) . The result is difficult to explain except by assuming either that the biosynthetic route is incorrect or that pantothenylcysteine does not get into the cells. Again, the observation that relatively massive doses of vitamin B12 given by mouth are required in the absence of in- trinsic factor to produce remissions in pernicious anemia, whereas very small amounts are required by injection, may indicate difficulty in absorption of this substance through the intestinal wall. Does the intrinsic factor, by combining with vitamin B12, provide a "handle" by means of which receptors in the intestinal wall can transfer this vitamin to the circulation, much as a free — SH group in pantothenylcysteine permits efficient absorption of this substance by A. suboxydans despite the delete- rious effects of an ionized carboxyl group? BIOGYTIN When yeast extract is assayed for biotin with Lactobacillus arabinosus, the result is much lower than that obtained with L. 100 VITAMIN AND GROWTH FACTOR RESEARCH casei; following acid hydrolysis the value given by the former organism rises to the constant value obtained with the latter. This observation of Wright and Skeggs (85) demonstrated the natural occurrence of a biotin conjugate and illustrates again the utility of quantitative comparative bioassays in the detection of naturally occurring vitamin derivatives. Isolation (86) and characterization (40) of the compound, which has the structure illustrated in formula XIII, was followed by means of this same assay procedure. O II HC CH NH2 I I I HoC^ GHCH2CH2CH2CH2CONHCH2CH2CH2GH2CH S I COOH (XIII) Biocytin This compound replaces biotin as a growth factor for animals, and for some but not all bacteria (84). Its metabolic significance is not yet known, but its unusual structure and the high proportion of the total biotin in some materials comprised by it indicate that it is more than a metabolic oddity. VITAMIN B12 This spectacular substance is exceptional in all ways : in the complexity of its structure, in the variety of active forms that can be obtained from nature, in its content of a metal ion (cobalt), in its unusally high (even for vitamins!) biological activity, and in the fact that one group of investigators succeeded in isolating it through the exclusive use of man as a test animal (aided greatly in the latter phases, undoubtedly, by the distinctive red color of the vitamin!). Nonetheless, its isolation in this country was greatly aided by discovery that certain lactic acid bacteria re- quired concentrates of it for growth under some conditions — an observation first made by Shorb (59). Because of its activity in controlling pernicious anemia in man, in partially alleviating 101 ESMOND E. SNELL delayed growth in children, in stimulating growth of farm animals fed rations based chiefly or exclusively on plant products, and, from the biochemical side, because of its relationship to nucleic acid synthesis and other biosynthetic reactions, it has stimulated unusual interest, and many review articles dealing with it are available {cf. 3,15). The structure of vitamin B12 is not yet known in detail, but it contains an atypical porphyrin skeleton (4a) the nitrogen atoms of which occupy four of the six coordination positions of cobalt (formula XIV) . * The fifth is occupied by a nitrogen of a nucleo- atypical porphyrin CHo ^ I HOCHCH2NH2 HCCHOHCHCHCHoOH , 0PO3H2-'' ( XIV) Vitamin 6^2 (partial formula) tide, the nature of which can vary in vitamin B12 isolated from different source materials. Coordination position six is occupied typically (but not exclusively) by an anionic grouping — cyanide hydroxide, oxalate, sulfate, nitrite, etc. — so that for any one parent structure containing a single nucleotide, a family of closely related compounds of slightly different properties can be obtained. Recent results (15a) show that by incorporating any of ten or so different nitrogen bases in the medium, Escherichia coli 113-3 will produce vitamin Bi2-like substances containing the corresponding nucleotides in the molecule — a finding that * Since this was written, the probable complete structure of vitamin B12 has been clarified by a combination of chemical and x-ray diffraction methods (D. C. Hodgkin, et al., Nature, 176, 325 (1955) and R. Bonnett, etal., Nature, 176, 328 (1955)). 102 VITAMIN AND GROWTH FACTOR RESEARCH multiplies indefinitely the number of possible vitamin-like struc- tures that can be obtained. These vary in their activities for different test microorganisms and for animals. The first com- pound isolated, first called vitamin B12 and later cyanocobalamin, contained dimethylbenzimidazole as the nucleotide base, and CN~ as the anion. It is fully active in animals and all micro- organisms so far known, and is the vitamin B12 of commerce. Pseudovitamin B12, which is similarly constituted but contains adenine in place of dimethylbenzimidazole, has full activity for some (not all) microorganisms, but little or none for animals. The significance of this variability in structure remains to be clarified. Similarly, the relationship of the intrinsic factor to vitamin B12 remains to be clarified. This substance appears to be a glycoprotein present in normal individuals but not in those with pernicious anemia, and is necessary for the absorption of the small amounts of vitamin B12 ordinarily present in foodstuffs. Whether it functions by combining with the vitamin and pre- venting its absorption by intestinal bacteria, thus conserving it for the host, or whether it functions otherwise is not known. The possibility that it promotes direct absorption through the intestinal wall has been mentioned earlier (see p. 100). LIPOIC ACID (tHIOCTIC ACId) As early as 1937, Snell, Tatum, and Peterson (76) observed the marked stimulating effects of acetate on growth of lactic acid bacteria, and included this substance in the nutrient medium for the purpose of clarifying other nutritional require- ments of these bacteria. It was observed (75) that the substance not only served as a buffer but played some more specific role in growth, and that it was not required in media supplied with yeast extract (76) . Following elucidation of several other growth requirements of these organisms, Guirard, Snell, and Williams (17) returned in 1941 to an investigation of this substance and demonstrated the existence in yeast and other natural materials of a substance that duplicated the growth-promoting effects of 103 ESMOND E. SNELL acetate for Lactobacillus casei but was far more active on a weight basis. This observation thus provided an assay method of known specificity for the substance. Independently, O'Kane and Gunsalus (38) had observed that cells of Streptococcus faecalis grown in synthetic medium required an unidentified substance in yeast extract to permit oxidation of pyruvate to acetate. Placed in juxtaposition, these findings suggested identity between the two unidentified substances, and following comparative tests of concentrates, Snell and Broquist (68) concluded that the two substances were identical. In an independent line of investigation, Kidder and Dewey had successfully sorted out the complex nutritional requirements of a protozoan, Tetrahymena geleii, and showed it to require one or more unidentified substances. In 1949, Stokstad and co- workers (78) showed that this unidentified substance contained pyridoxal, copper ions, and an unidentified growth factor that was named protogen, all of which were necessary for growth in the basal medium. Supplementation of this medium with the former two substances thus permitted development of an assay of known specificity for protogen, and the preparation of con- centrates. Such concentrates also were highly active in pro- moting growth of L. casei — a fact that led Snell and Broquist (68) to conclude that the acetate-replacing factor for L. casei and protogen were identical. By use of these assay methods, isolation of an active crys- talline substance was first achieved by Reed et al. (52), who CH2 HsQ^ ^CHCHgCHsCHsCHgCOOH HS SH (a) /CH2 HaC^ ^CHCHgCHaCHsCHaCOOH s s (6) ;XV) Lipoic acid, (a) reduced and (6) oxidized 104 VITAMIN AND GROWTH FACTOR RESEARCH named the crystalline substance lipoic acid, and shortly there- after by Patterson et al. (46), who later renamed the product thioctic acid. Chemical characterization and synthesis (9,25) showed the substance to be 6,8-dithiooctanoic acid (formula XV) ; it can exist in both the cyclic structure and as an open-chain dithiol, the interconversion of the two being explicitly involved in its enzymatic role as a cofactor in the oxidative decarboxylation of pyruvate to acetate and other a-keto acids to the corresponding carboxylic acids containing one less carbon atom (18,51). Such oxidative decarboxylation also requires thiamin pyro- phosphate, and it appears an unsettled point whether the two are combined into a single coenzyme (51). Most nutritional investigations with higher animals have failed to show a growth response to added lipoic acid. However, DeBusk and Williams (14) have recently observed both increased growth and increased efficiency of food utilization in young rats and chicks fed trace amounts of the substance. The reasons for the differing results are not yet known. If these results are confirmed, this will provide another instance of a vitamin dis- covered, isolated, and characterized as a microbial growth factor before its role in the nutrition of higher animals was suspected. However, in a sense it is academic whether the substance is or is not a vitamin, i.e., required in the diet of animals. There is no doubt that it is a biocatalyst of great importance in animal as in microbial and plant life, and the genetic accident that determines whether the substance can or cannot be synthesized in animals, though it has important implications for nutrition, hardly changes the intrinsic biochemical importance of the substance. OTHER MICROBIAL GROWTH FACTORS A variety of additional substances found essential for growth of one or another microorganism during the past few years is listed in Table I. Although they are obviously important for the organisms that require them, little is known of their metabolic significance. D-Alanine is required for growth of many lactic acid bacteria, but only in the absence of vitamin Bg. It is now 105 ESMOND E. SNELL known that this interchangeability results from the fact that vita- min Be is required for synthesis of this amino acid; when the latter is supplied preformed, the requirement for vitamin Be disappears, provided each of the L-amino acids required for growth also is supplied (24,83), This remains the only known instance of a D-amino acid being essential for growth, although these substances, once thought not to occur naturally, have now been frequently encountered in various microbial products, such as antibiotics and capsules. A closer investigation (74) shows the D-alanine occurs chiefly in the cell wall, of which it is appar- ently an essential component, and in soluble cell extractives. Recent investigation of the composition of bacterial cell walls shows them to be rich in carbohydrate materials, including amino sugars (55). It is possible that the requirement of Lactobacillus bifidus {or A^-acetylglucosamine derivatives (19a,31) and of some lactobacilli, grown with pentoses, for traces of glucose (39) may reflect a requirement for these substances as structural materials for cell wall formation. /?-Hydroxybenzoic acid and D-lactic acid (or its homologues) are examples of growth requirements found so far only in artifi- cially induced mutants; this does not lessen their importance but is mentioned to illustrate the utility of mutant organisms in the detection of previously unrecognized essential metabolites. The technique has been especially valuable in permitting detec- tion and isolation of intermediates in biosynthetic reactions — compounds which normally have such a transient existence that their natural occurrence would be difficult to detect in any other way. Space limitations do not permit tabulation and discussion of the many compounds discovered in this fashion — each of which can serve as essential organic nutrients for certain mutant organisms under a restricted set of conditions. Appropriate peptides stimulate or are even essential for growth of many bacteria, and recent investigations have begun to throw light on the reasons these compounds show activities not shared by their component amino acids. Three model in- stances have so far been observed : ( 7) assimilation of one amino 106 VITAMIN AND GROWTH FACTOR RESEARCH acid, a, may be inhibited by a second amino acid, b. Under these circumstances, peptides of a, perhaps because of their greater structural dissimilarity to the inhibitor, may greatly sur- pass the free amino acid in activity. For example, D-alanine inhibits utilization of L-alanine by Lactobacillus casei, but not that of peptides of L-alanine. Such peptides far surpass free L-alanine in growth-promoting activity under these conditions and may become obligatory requirements for growth (28). Many ex- amples of this type of behavior are now known (28). (2) An essential free amino acid may be subject to a degradation reaction that rapidly destroys it before much of it can be used for growth, i.e., protein synthesis. If its peptides are not subject to the degradation reaction, they will greatly surpass the free amino acid in growth-promoting activity. For example, tyrosine peptides are much more active than free tyrosine in promoting growth of S. faecalis under conditions such that free tyrosine can be destroyed by tyrosine decarboxylase, but peptides and free amino acid are equally active when conditions are so ar- ranged as to make this enzyme nonfunctional, e.g., by growth in the absence of vitamin Be (29). {3) For reasons still unknown absorption of one free amino acid may take place with diffi- culty or may require the presence of unusually high concentra- tions of a second amino acid. Under these conditions, peptides of the amino acid may be much more effective than the free amino acid in promoting growth. For example, Lactobacillus delbrueckii 730 requires relatively tremendous quantities o^ histi- dine for growth, but very small amounts of histidine peptides. In this same organism, tyrosine peptides are much more active than free tyrosine in promoting growth when the histidine concentration is low, but equally active when the histidine con- centration is raised (42), and these phenomena cannot be ac- counted for in terms of either mechanism (7) or (2). None of the instances cited above need be interpreted as indicating direct utilization of the peptides without prior hydrol- ysis; indeed some evidence suggests that hydrolysis occurs be- fore utilization. In none of these experiments, further, is there 107 ESMOND E. SNELL evidence for a special catalytic role of the stimulatory peptides in metabolism, although the possibility of such a role for other peptides is not, of course, excluded. Variability in Nutritional Requirements with Conditions Cursory reading of the nutritional literature, especially that dealing with animal nutrition, leaves the impression that the nutritional requirements of a given species for vitamins, etc., is a rather constant thing, that these requirements can be deter- mined and expressed in terms of a quantitative figure for the average daily requirement which has validity quite apart from the conditions used in assessing the requirement. From parts of the foregoing discussion it should be clear that this is far from the case in microbial nutrition. Lactobacillus casei grows well in the absence of both D-alanine and L-alanine peptides if pyridoxal is supplied; in the absence of pyridoxal, both D-alanine and such peptides are required, the former be- cause it cannot be synthesized in the absence of vitamin Bg, the latter because D-alanine inhibits utilization of free L-alanine (which also cannot be synthesized in the absence of vitamin Be) but not that of L-alanine peptides. Again, L. casei requires relatively large amounts of biotin if aspartate and unsaturated fatty acids are omitted from the medium, much less if aspartate (but not the fatty acid) is supplied, and none at all if both prod- ucts are supplied. Such sparing effects of one nutrient on the requirement for another frequently indicate important metabolic roles played by the vitamins. In the instances cited above, a role for vitamin Be in the synthesis of d- and L-alanine is indicated, and the necessity for biotin in the synthesis of aspartate and un- saturated fatty acids likewise appears highly probable. Similarly, the necessity for folic acid in the synthesis of the purine and pyrimidine bases and serine early became evident from the fact that in appropriate media these substances greatly reduced or eliminated completely the requirement of L. casei and S. faecalis for folic acid. 108 VITAMIN AND GROWTH FACTOR RESEARCH Examples of this nature could be multiplied indefinitely, and a more complete discussion has been presented elsewhere (66,67). They have their basis in the fact that the vitamins are required only to permit the functioning of enzymes that in turn manufacture products essential for growth. Frequently, if these products are supplied preformed, or tlie necessity for the enzymic functioning is otherwise bypassed, need for the enzyme (and hence for the vitamin) is reduced, and with some simple organisms can be eliminated completely. One strongly suspects that closer investigation would show a similar variability (though less marked because of the greater organization and range of metabolic reactions present) in higher animals. The well-authenticated variability in the thiamin requirement of animals with the proportion of the caloric intake supplied as fat, and in the vitamin B12 requirement with the choline intake, are straws indicating the direction research may take in these matters. As the number of new nutrients available for study decreases, perhaps animal nutritionists will turn more toward the study of such interrelationships between nutrients and their significance for practical nutrition. Some Future Areas for Nutrition Research The last few years have seen a decrease in the rate of dis- covery of new vitamins and growth factors. Some experimental animals can now be grown on essentially synthetic diets, and it is becoming more and more difficult to detect entirely new bacterial growth factors. Does this mean we are approaching the time when no more dietary factors remain to be discovered? Although this time must eventually arrive, it appears unlikely that it is yet here. Some of the readily available (though experi- mentally more difficult) experimental animals have not been grown on defined diets as yet, and there are indications of un- identified dietary requirements for some of these (e.g., monkeys (78a)). Similarly, little is known of the nutritional requirements 109 ESMOND E. SNELL of thousands of microbial species. Only a dent has been made in the problem of the nutrition of protozoa and insects. The discovery by Fraenkel (1 5b) of vitamin B-p as an essential growth factor for the meal worm, Tenebrio molitor, and its iden- tification as carnitine by Carter (9b), a compound that also occurs in higher animals but whose function is unknown, illustrates the fruitfulness of investigations of the nutrition of the currently neglected lower animals. Having discovered the factors required in common by most living species, we may be on the verge of discovering those nutrients characteristically required by a restricted number of species (c/. D-alanine) . If such nutrients exist, knowledge of them would be invaluable in permitting design of antimetabolites directed against specific groups of organisms. In bacteria, appropriate nutrients can sometimes partially overcome the deleterious influence of certain drugs {cf. the effect of glutamine on alcohol tolerance in some bacteria (50)). Similar relationships should hold in animals and provide a large area for investigation. Proper nutrition practice has already reduced the incidence of many of the infirmities of old age. Can further progress along these lines be made ; can, indeed, the aging process itself be slowed? Such questions suggest that, far from being an obsolescent field, the future may hold triumphs for experimental nutrition equal to those of the past. References 1. Angier, R. B., J. H. Boothe, B. L. Hutchings, J. H. Mowat, J. Semb, E. L. R. Stokstad, Y. SubbaRow, C. W. Waller, D. B. Cosulich, M. J. Fahrenbach, M. E. Hultquist, E. Kuh, E. H. Northey, D. R. Seegar, J. P. Sickels, and J. M. Smith, Jr., Science, 703, 667 (1946). 2. Barton-Wright, E. C, The Microbiological Estimation of the Vitamin B Complex and Amino Acids. Pitman, London, 1952. 3. Bessey, O. A., H. J. Lowe, and L. L. Saloman, Ann. Rev. Biochem., 22, 545 (1953). 4. Bond, T. J., T. J. Bardos, M. Sibley, and W. Shive, J. Am. Chem. Soc, 71, 3852 (1949). 4a. Brink, C, D. C. Hodgkin, J. Lindsey, J. Pickworth, J. H. Robertson, and J. 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L. Cresson, H. R. Skeggs, T. R. Wood, R. L. Peck, D. E. Wolf, and K. Folkers, J. Am. Chem. Soc, 72, 1048 (1950) ; ibid., 74, 1996 (1952). 114 THE SIGNIFICANCE OF INDUCED ENZYME FORMATION* S. SPIEGELMAN and A. M. CAMPBELL, f Department of Bacteriology, University of Illinois, Urbana, Illinois Introduction It is no historical accident that a renewed interest in the phenomenon of "enzymatic adaptation" came hard on the heels of the explosive birth of modern microbial genetics. Two good reasons can be advanced for this virtual concurrence. In the first place, the work with Neurospora, yeast, and the bacteria provided the genetically controlled material necessary for bio- logically intelligent and interpretable experiments. Secondly, from its very inception, microbial biochemical genetics posed the gene-enzyme problem in terms of a rapidly accumulating multitude of experimental facts which could not be ignored. Their existence demanded an immediate search for tools which would permit the experimental analysis of such statements as "genes control enzymes." There were two obvious directions which a quest of this na- ture could, and did, take. One started with the gene and led to * The original experiments reported here from the authors' laboratory were supported by grants from the National Cancer Institute of the U. S. Public Health Service and the Office of Naval Research. t Present address: Department of Bacteriology, University of Michigan Ann Arbor, Michigan. 115 S. SPIEGELMAN AND A. M. CAMPBELL examination of the enzymatic consequences of individual modi- fications in the genome with the hope that the interrelations re- vealed by their careful analysis would ultimately yield a clue to the underlying mechanisms of genetic control. The other, starting from the enzyme, adopted the premise that fruitful speculation on the role of the gene was unlikely in the absence of a relatively detailed understanding of the mechanism of enzyme formation. Those who felt inclined toward the second ap- proach were necessarily forced to look for a system in which the process of enzyme synthesis could be experimentally analyzed. It is not surprising that the attention of these workers was im- mediately turned to the phenomenon known as "enzymatic adaptation." There had existed in the microbiological litera- ture since 1888 a number of instances subsumed under this desig- nation in which the presence of a particular compound ap- parently resulted in a well-defined change in the enzymatic activities. However, before these or similar examples could be accepted as systems suitable for the study of enzyme synthesis, the following criteria had to be rigorously satisfied. 7. The changed enzymatic activity observed must not be due to the selection of preexistent mutant types but rather to an induced enzymatic modification against a constant genetic back- ground. 2. The observed change in enzymatic activity must be a reflection of the appearance of an active apoenzyme, rather than due to the accumulation of cofactors or intermediates unique to the metabolism of the inducing substrate. The use of recently evolved genetic methodology adapted to the analysis of microbial populations, and of modern en- zymological procedures, made it possible to demonstrate in certain instances that both criteria could be met. These re- searches have been thoroughly summarized and discussed in recent reviews (55,75,90) and need not be detailed again here. Certain consequences (71,72) may, however, be noted. The- oretically these findings possess obvious implications for the problem of gene function. They establish that possession by a 116 INDUCED ENZYME FORMATION cell of a particular gene in its nucleus does not thereby guarantee that the corresponding enzyme will be found in the cytoplasm in utilizable amounts. Thus, predictive description of phenotype from a knowledge of genotype alone is impossible, even at the basic level of enzymatic constitution. It was necessary therefore to revise such statements as "genes control enzyme synthesis" to read "genes control the potentiality of enzyme synthesis." Whereas such theoretical implications are of great interest, it was the emergent experimental consequences which proved to be of greater importance. In successfully meeting the two criteria mentioned above, an unequivocal demonstration was provided that the induced syntliesis of specific enzymes could be attained under relatively simple and controllable conditions against a constant genetic background. It was evident that the system had been found and defined which converted into experimental reality the possibility of inquiring into the mechanism of enzyme synthesis. It is the purpose of the present essay to summarize the information which has emerged from the study from such systems. A complete detailed account of the findings of the field will not be found here. On the contrary, the prerogatives of the essayist have been exercised to select and interpret that which is most pertinent according to the writers' own peculiar bias. Those readers who find themselves in agreement with both the selection and the interpretation will label the result an example of good judgment and analytical perception. Others will label it differently. The very nature of the phenomenon virtually dictates the kinds of questions which are initially asked of it. The presence of certain agents called inducers can, in the presence of a suitable energy supply, stimulate the formation of specific enzymes. The use of inducible systems to elucidate the mechanism of enzyme formation resolves itself quite naturally into attempts to provide adequate answers to the following questions : a. What is the nature of the precursor material which is transformed into active enzyme molecules? 117 S. SPIEGELMAN AND A. M. CAMPBELL b. What is the nature of the enzyme-forming mechanism which converts the precursor material into active enzyme? c. What is the role of the inducer, the presence of which specifically stimulates the appearance of the corresponding enzyme? We can now turn our attention to an estimation of the ex- tent to which answers can be provided to the questions just proposed. The Nature of the Precursor The problem of the precursor is perhaps most dramatically exhibited by considering inductions carried out under the simplest circumstances. It has been shown by a number of workers with a variety of enzyme systems (55,75,90) that enzyme synthesis can be induced in the absence of a nitrogen source in cells suspended in a buffer solution of the inducer. That the appearance of enzyme activity actually involves the formation of enzyme has been established in these cases by exhibiting the homologous enzyme in extracts prepared from the induced cells. In such inductions, the nitrogen employed by the cell in fabricat- ing the new enzyme molecule must come from some preexisting nitrogenous components, and one is immediately faced with the obvious necessity of identifying the components so employed. Before considering the most recent experiments which have led to a satisfactory resolution of this problem, it is of interest to note briefly some of the earlier work which, although inconclu- sive, nevertheless exerted a strong influence on the subsequent development of this aspect of the problem. Monod (53), in his classic investigation into the growth of bacteria, discovered the existence of a severe interaction between enzyme-forming systems, which was expressed by the fact that simultaneous synthesis of two metabolically unrelated enzymes did not occur on exposing cells to a mixture of the two relevant inducers. In general, only one of the enzymes was formed at a time. A similar situation was uncovered in the yeasts by Spiegelman and Dunn (80). 118 INDUCED ENZYME FORMATION With yeast the presence of an external nitrogen supply greatly suppressed the severity and the extent of this interaction, and in- deed, under certain circumstances simultaneous formation to two otherwise interfering enzymes was made possible. Although these interactions were discovered relatively early in the renewed investigation of the phenomenon of enzymatic adaptation, their detailed significance remains to be delineated. Nevertheless, at the time, they were interpreted to suggest a competition for some commonly required nitrogenous material and therefore implied the existence of a precursor not as yet specified as to its ultimate enzymatic function. To these findings may be added those which established that the induction of enzymes requires the participation of a functional and utilizable energy-generating mechanism. Agents such as 2,4-dinitro- phenol (50), sodium azide (74), and arsenate (93) which pre- vent the utilization of energy generated by metabolism also inhibit the induction of enzyme activity. The importance of these early observations derived essen- tially from the fact that they made unlikely one quite obvious and attractive possibility of explaining the phenomenon of induced enzyme formation. This hypothesis suggests that the mech- anism involved is one akin to the activation of trypsinogen to trypsin. Of course, the fact that energy is required for the induc- tion precludes at once any simple application of this concept. In addition, such a model would suppose the preexistence in a cell of inactive forms of enzymes already fully determined as to their specificity and their function. The inhibitory interactions observed would be difficult to explain under these circumstances. Although observations of this nature could not definitely decide the issue, they clearly encouraged the search for a nitrogenous precursor not as yet restricted in its specificity and potentially convertible into more than one kind of enzym.e molecule. In designing experiments which seek to reveal the nature of this precursor, one can be guided by the fact that, in principle, three mechanisms of enzyme synthesis can be written down. They are as follows: 119 S. SPIEGELMAN AND A. M. CAMPBELL complex precursor > active enzyme (1) complex precursor + free amino acids > active enzyme (2) free amino acids > enzyme (3) Reaction (1) assumes the preexistence in the noninduced cell of a complex precursor which can be converted into active enzyme without the involvement of the free amino acids. This property distinguishes it from mechanisms (2) and (3) and permits an ex- perimental decision. Evidently what we are asking is whether it is possible for the precursor to become active enzyme without the participation of the free amino acid pool. Putting the question this way suggests immediately the necessity for examining the effect on the syn- thesis of enzyme of any experimental condition which decreases the availability of the free amino acids. Several methods are available and have been employed for achieving a restriction of this nature and they may be listed as follows : a. The use of amino acid analogues as specific agents to prevent the incorporation of the free amino acids into protein. b. In the case of those cells which possess an internal amino acid pool, to examine the effect of depletion and replenishment of this pool under conditions which would minimally disturb other components of the cell, c. The use of amino-acid-deficient mutants which would make unavailable specific components. Experiments along all these lines have been realized with yeast and the bacteria. The following paragraphs summarize briefly the evidence obtained. THE EFFECT OF AMINO ACID ANALOGUES ON ENZYME SYNTHESIS Halvorson and Spiegelman (32) carried out a study with a series of more than 40 analogues of amino acids for their effects on induced formation of alpha glucosidase in Saccharomyces cerevisae. A parallelism was established between the capacity of an analogue to inhibit net protein synthesis, as measured by growth, and its ability to suppress enzyme synthesis. In the case 120 INDUCED ENZYME FORMATION of the effective analogues, complete and specific reversal of the inhibition was achieved by the addition of the homologous amino acid. The generality of these findings was extended by the independently performed experiments of Lee and Williams (47) who demonstrated that the administration of ethionine to the intact rat prevented the formation of tryptophan peroxidase. In the experiments with the yeast (32,34,36,83), it was possible to demonstrate by direct analysis that the presence of an effective amino acid analogue inhibits incorporation from the free amino acid pool into the protein fraction. One interesting feature which emerged from these experiments is that the presence of any one of the active amino acid analogues prevents the incorpora- tion not only of its homologue but virtually of all the other amino acids as well. Further, no peptide fragments, unique to pools derived from cells incubated with an amino acid analogue, could be found. In these studies, no evidence for an amino-acid-independent transformation of a complex precursor into active enzyme was obtained. The data rather led to the conclusion that the primary pathway of the induced formation of enzyme in nondividing cells of yeast involves the compulsory utilization of the internal free amino acids. The fact that the utilization of nonhomologous amino acids was blocked concurrently suggested further that the first stable intermediate formed in the synthesis of an enzyme molecule is of such a complexity as to demand the simultaneous availability of a large portion of the component amino acids. THE EFFECT OF THE AVAILABILITY OF FREE AMINO ACIDS ON ENZYME SYNTHESIS If the conclusions derived from the experiments with amino acid analogues are correct, it would be expected that the ability of cells to form enzyme should parallel the availability of free amino acids for protein synthesis. One striking difference between the enzyme-forming ca- pacity of yeast as distinguished from that of many Gram-negative bacteria receives simple explanation in these terms. Thus, 121 S. SPIEGELMAN AND A. M. CAMPBELL yeasts are able to form enzymes when suspended in nitrogen-free solutions of inducer, whereas the Gram-negative bacteria in general require an exogenous supply of nitrogen as a necessary concomitant of enzyme synthesis. The work of Taylor (96) suggests a reasonable explanation for this apparent independence of the yeast enzyme-synthesizing mechanism. This investigator surveyed a variety of yeast and bacteria for the presence of free amino acids in their internal environment. Of the three yeast types examined, all possessed detectable quantities of the five amino acids looked for. Among the bacteria, the Gram-posi- tives possess primarily glutamic acid and lysine. None of the Gram-negatives included in the survey contained detectable free amino acid by the procedures employed. The possession of an internal pool was subsequently found to be a universal attribute of a wide variety of yeasts (85). It would appear that the ability of yeast to get along without an external source of nitrogen for enzyme synthesis is due to the fact that they have internal supply. To examine the question then of the effect of free amino acid availability on enzyme formation in the yeast it was necessary to devise and employ procedures capable of modifying these pool levels both quantitatively and qualitatively. Using such procedures, Halvorson and Spiegel- man (33) demonstrated a strong correlation between enzyme- forming capacity and pool level in both depletion and replenish- ment cycles. The results obtained in these studies supported the conclusion that free amino acids constitute the quantitatively predominant source of nitrogen in the formation of new enzyme molecules. Again, no evidence was uncovered which suggested the existence of a detectable amino-acid-independent transfor- mation of a preexisting complex prescursor into active enzyme molecule, ENZYME FORMATION BY AMINO ACID AUXOTROPHIC MUTANTS The third approach mentioned which could provide rele- vant information involves the use of the auxotrophic mutants deficient in the ability to synthesize one or another of the amino 122 INDUCED ENZYME FORMATION acids. It was obvious that organisms such as yeast which ac- cumulate an internal free pool would be difficult to employ in such studies, and not unexpected difficulties arose when they were attempted with the yeasts. Fortunately, however, this approach was successfully applied almost simultaneously in two laboratories, and it is interesting to note that in both instances the organisms employed, Escherichia coli and Aerobacter aerogenes, possess a vanishingly small internal supply of free amino acids. One of these investigations stems from the illuminating studies of Monod and Cohn (55) and their collaborators into the formation of beta-galactosidase by the ML strain of E. coli. It is interesting to note that in the course of these studies Cohn and Torriani (19,20) had discovered the existence of an enzymati- cally inactive protein (Pz) which was serologically related to the beta-galactosidase. In addition to this obvious structural relationship, they established a suggestive correlation between the distribution of the Pz protein and the capacity of the cells to synthesize the beta-galactosidase. Finally, they also showed that a significant decrease in Pz occurred in cells during the in- duced synthesis of beta-galactosidase. Although not the only possible hypothesis entertained by the authors, it is clear that all of these observations would receive ready explanation if Pz were indeed the precursor of the beta-galactosidase. In any event, taken together, the observations noted offered the most impressive evidence existent in the literature to support the sug- gestion that a preexistent complex specific precursor is involved in the synthesis of a known enzyme. There was, however, one fact that militated against the acceptance of this view. Nitrogen-starved cells, though pos- sessing normal amounts of Pz, showed no ability to snythesize the beta-galactosidase unless an external source of nitrogen was provided. It was nevertheless still possible to imagine that the starvation procedure interfered in some way with the metabolic step required for transformation of Pz into active enzyme. Monod, Pappenheimer, and Cohen-Bazire (56) undertook to investigate this question further by employing a series of 123 S. SPIEGELMAN AND A. M. CAMPBELL mutants each of which was deficient in the abihty to synthesize a single amino acid. These mutants were subjected to a "specific starvation" by being grown in a medium in which the required amino acid was present in Hmiting quantities, whereas all other compounds were in excess. Immediately upon the cessation of growth which attended the exhaustion of the amino acid, an inducer of the beta-galactosidase was introduced. It was found that little or no enzyme was synthesized by cells so treated, despite the fact that they contained normal amounts of Pz. Such cells do, however, form enzyme immediately upon the addition of the amino acid they are unable to synthesize. These results made it necesssary to abandon any interpretation of the relation between Pz and the beta-galactosidase which involves a direct, amino-acid-independent conversion of Pz into active enzyme. The large number of amino acid auxotrophs em- ployed in this study would suggest further that if Pz is indeed the precursor, a considerable number and variety of amino acids must be added to it before it is converted into active enzyme. Ushiba and Magasanik (98) employed essentially the same approach in their study of the adaptive utilization of myoinositol by mutants of Acetobacter aerogenes. The results obtained led these authors also to the conclusion that the induced formation of the enzymes they were studying involved extensive synthesis from the amino acids. In a subsequent study, Rickenberg et al. (63) reported similar experiments and results with E. coli strain K12, IS THERE A PREEXISTENT COMPLEX PRECURSOR? The experiments cited thus far make unlikely any mechanism of synthesis which presumes the conversion of a preexistent pre- crusor into enzyme by a process which is independent of the free amino acids. The only alternatives left are, either that there is no preexistent complex precursor, or that one does exist but be- comes active enzyme only after the incorporation of amino acids. The most obvious experimental approach aimed at a choice between these alternatives would appear to be the use of isotopic 124 INDUCED ENZYME FORMATION labels. Thus, the induction of enzyme synthesis in uniformly labeled cells suspended in unlabeled medium should provide the necessary data, providing the enzyme synthesized can be isolated in a pure state and its iso topic content determined. Rotman and Spiegelman (66), and Hogness, Cohn, and Monod (38) independently undertook to provide data relevant to this issue, using the beta-galactosidase system E. coli. Rotman and Spiegelman (66) secured uniformly labeled cells by growth in C^^ lactate. Enzyme was induced for short periods while the cells were suspended in nonradioactive me- dium. The beta-galactosidase synthesized was isolated and puri- fied by means of zone ionophoresis through starch columns. Further purification was achieved with the aid of specific precipitation with purified antiserum. The results obtained revealed that less than 1 per cent carbon of the newly formed enzyme molecules could have been derived from any cellular components existing prior to the moment of the addition of the inducer. In the experiments of Cohn, Hogness, and Monod, S^^ was employed as the isotopic label and similar methods were used for the isolation of the enzyme. Identical results and con- clusions were obtained. These findings virtually eliminate any hypothesis which assumes the preexistence of a complex precursor material which is convertible into enzyme. It is evident that a mechanism suggesting the de novo formation of enzyme from amino acids is at present the only one which has received experimental support. A consequence of considerable importance issuing from this last conclusion is that induced enzyme synthesis is thereby equated to the process of protein synthesis. It follows that data derived from the study of enzyme induction are pertinent and relevant to the more general problem of protein formation. Further, the use of inducible enzymes as model systems of pro- tein formation can, in principle and fact, confer two significant operative advantages. In the first place, one is assured that the synthesis of a protein is being examined — a certainty not avail- able to experiments dependent solely on incorporation studies. 125 S. SPIEGELMAN AND A. M. CAMPBELL Secondly, the formation of as little as 0.01 ng of new protein can be detected with ease and precision. Precursor and the Nature of the Enzyme-Forming System In the present discussion, the term "enzyme-forming sys- tem," hereinafter referred to as EFS, will be used to designate that structure in the cell which is directly and "personally" involved in the process of fabricating the enzyme molecule. This verbal device is employed to isolate the EFS conceptually from all the other cellular components which can and probably do intervene more or less indirectly in the synthetic process. It will, of course, be noted that there is an assumption made here. By so stating the problem we do presume the existence of such a unique structure and, at least implicitly, ignore the possibility that proteins and enzymes are formed by a multitude of cooper- ating and sequential reactions. In thinking about the possible nature of the EFS and in designing experiments to clarify the mechanism of its functioning, it is difficult to avoid being influenced by the results of the investigations into the precursor question. In a sense, these findings force an active search for EFS. The data we have reviewed relevant to the precursor problem are satisfyingly clear- cut, almost distressingly so. They lead compellingly to the conclusion that in fabricating a new enzyme molecule, the cell prefers to weave it rather than to stamp it into existence. In this process, the simplest components are employed. Further, we find no evidence for any stable intermediates smaller than that requiring the presence and utilization of all the amino acids. A stepwise formation beginning with simple peptides and pro- ceeding through polypeptides of intermediate lengths would appear to be eliminated. From one point of view, this is of course a pessimistic conclusion. It suggests that a successive approximation to an understanding of how proteins are syn- thesized will not be achieved in terms of a gradually better in- sight gleaned from the study of intermediate pieces of increasing complexity as they approach the final stage of synthesis. A 126 INDUCED ENZYME FORMATION door is thus slammed upon an extremely attractive approach for tackling the question of protein formation. Those who accept these conclusions obviously are faced with the necessity of find- ing a new approach to the solution of the problem of protein synthesis. Adopting a mechanism of protein synthesis which involves the simultaneous availability of the constituent amino acid leads one quite naturally to consider a template-type mechanism. It is unnecessary here to undertake an extensive discussion of the recent information (3,4,12,13,21) obtained from radioactive ex- periments with intact animals and tissues which have attempted to decide between template and stepwise mechanisms. In general, unequal labeling of the protein has been taken as an argument against the template hypothesis. A serious difficulty is introduced by the realization that the incorporation of label compounds need not provide us with information relevant solely to the question of total protein syn- thesis. Exchange reactions are necessarily included in the information obtained from such experiments. That a very real difficulty exists is well illustrated by the recent experiments re- ported by Gale and Folkes (25,26) in which a dissociation of net protein synthesis from incorporation by exchange reactions has been demonstrated. As had been shown with yeast (32), it was found that /?-chlorophenylalanine can prevent new protein synthesis in Staphylococcus aureus. In addition. Gale and Folkes discovered that although the presence of this analogue effec- tively prevents the incorporation of phenylalanine into the protein, it has relatively little effect on the exchange incorpora- tion of glutamic acid. The existence of such phenomena makes it difficult to inter- pret with certainty the significance and uniqueness of data derived solely from incorporation studies. On the Role of the Inducer One of the most dramatic features of the phenomenon of enzyme induction is the requirement for the presence of the 127 S. SPIEGELMAN AND A. M. CAMPBELL inducer and the apparent precision with which it specifically stimulates the formation of a particular enzyme. Monod and Cohn (55) have recently reviewed the bulk of the published information relevant to inducer function. Much of this knowledge we owe primarily to the efforts of these two men and their collaborators. Certain experiments are particularly pregnant with interesting implications for the nature of EFS and it is these which will occupy our attention. SPECIFICITY AND THE RELATION OF AN INDUCER TO THE HOMOLOGOUS ENZYME There are two possible mechanisms of inducer action which can be formulated with sufficient exactitude to permit their experimental elimination. These have been labeled by Monod and Cohn (55). 7. The Functional Hypothesis. The synthesis of an enzyme is presumed to be linked to its activity, from which hypothesis one would conclude that effective inducers would necessarily be substrates. 2. The Equilibrium Hypothesis. It is assumed that inducers must form complexes with enzyme synthesized as a sine qua non of enzyme formation. A number of observations eliminated the first hypothesis. Thus, Spiegelman, Reiner, and Sussman (88) demonstrated that maltose can induce alpha-glucosidase at pli values that preclude detectable metabolism of the maltose even by fully induced cells. Analogues of natural substrates have been employed for similar purposes. Thus, alpha-methyl-glucoside can be shown (76,82) to be an inducer of maltase under con- ditions in which utilization cannot be detected. Further, Monod, Cohen-Bazire, and Cohn (54) have demonstrated similarly that thio-methyl-beta-D-galactoside and melibiose, neither of which is detectably metabolized by strain ML of E. coli, are nevertheless inducers of beta-galactosidase. The second hypothesis was proposed in its simplest form first by Yudkin (103) who did so in terms of a mass action hy- pothesis in which combination between inducer and enzyme is 128 I INDUCED ENZYME FORMATION assumed to drive the reaction in the direction of precursor con- version into enzyme. This complexing concept leads to several predictions, the experimental violation of any one of which would require either its revision or complete abandonment. We may list some of these as follows : 7. Substances which can complex with enzymes should be effective inducers. 2. Substances shown to be incapable of complex formation with a given enzyme likewise should be unable to induce this enzyme. 3. The dissociation constant of the substance measured in terms of its inductive effect on enzyme synthesis should be com- parable in magnitude to the value obtained in experiments in which the constant is derived from complexing properties of the inducer with enzyme. It should be noted that the term "complex formation" employed here is meant to subsume both the specific type, characterized by combination between an enzyme and its sub- strate or competitive inhibitor, and the nonspecific type, repre- sented by a complex between an enzyme and a noncompetitive inhibitor. Thus, proof that an inducer does not form a specific complex with enzyme does not eliminate it as an enzyme com- plexant, since it leaves open the possibility of nonspecific com- plex formation. There is no a priori reason for believing that nonspecific combinations cannot function in the process of enzyme synthesis. It is difficult to provide convincing exceptions to the second deduction mentioned, involving as it does only negative proper- ties. However, violations of both (7) and {3) have been found. Thus, Lederberg (45) exhibited a mutant of E. coli which fails to respond to lactose as an inducer of beta-galactosidase, despite the fact that lactose is a substrate and therefore a specific com- plexant. Monod, Cohen-Bazire, and Cohn (54) subjected these con- siderations to the first systematic and thorough analysis. They revealed that thio-phenyl-beta-D-galactoside, although a potent 129 S. SPIEGELMAN AND A. M. CAMPBELL competitive inhibitor of the beta-galactosidase, was nevertheless incapable of inducing the formation of this enzyme. Other specific complexants, e.g., neolactose and phenyl-beta-D- galactoside, were similarly found devoid of inductive capacity. An instance of an apparent violation of the third deduction was provided by Spiegelman and Halvorson (82). The dis- sociation constant of methyl-alpha-D-glucoside, an inducer of alpha-glucosidase synthesis in Saccharomyces cerevisiae, was deter- mined and compared with the constant derived from its com- plexant properties with enzyme. The two values were found to differ by a factor of about two hundred. It must be emphasized that the types of hypothesis made unlikely by the experiments cited are highly restricted in nature. All of these experiments had in common an examination of the effect of the inducers as enzyme complexants in terms of meas- urable effects on enzymatic function. By their very nature they could not preclude the possibility of combination at some site which possessed no consequences in terms of a detectable modification of enzyme activity. It must further be noted that such experiments do not eliminate the possibility that inducer serves as a coupling agent which leads to the formation of a stable complex among enzyme, inducer, and a third component. If the inducer would combine with enzyme effectively only in the presence of the third com- ponent, violation of all three predictions could obtain. THE QUESTION OF STOICHIOMETRY OF INDUCER ACTION Until the advent of the resourceful exploitation by Pollock of the penicillinase-forming system of B. cereus, the question of stoichiometry was one which could be formulated but hardly resolved. Pollock (59-61) discovered that fleeting exposures of cells to minute concentrations of penicillin at ° C. can lead to the specific adsorption of enough inducer molecules to permit penicillinase formation even subsequent to the destruction of all unbound penicillin. With the use of S^^-labeled penicillin it was found that specific fixation is saturated at about 80 atoms 130 INDUCED ENZYME FORMATION per cell. Having purified the penicillinase and determined the minimum turnover number, Pollock and Torriani (cited in 62) were able to demonstrate that each molecule of penicillin thus fixed can cause the formation of at least ten molecules of pen- icillinase. These observations then establish that an inducer can act catalytically. The unique feature of virtually irreversible adsorption of inducer has thus far not been exhibited in other enzyme-forming systems, and hence this type of experiment is at present feasible only in the penicillinase-producing system. The Relatiofiship of Inducer to EFS The data reviewed thus far indicate that enzyme molecules are fabricated on a template. Further, inducer molecules appear to be specifically bound to some site concerned with enzyme synthesis. Identification of the inducer-complexing site with the template is the simplest and most economical hy- pothesis at present worthy of further exploration. The question naturally arises whether combination between template and inducer leads immediately to full function. The least complicated variety of such an "activator" hypothesis would assume that a full complement of templates preexists and that the addition and adsorption of inducer mole- cules is all that is required to convert them to complete activity. This relatively simple model possesses several easily testable pre- dictions. It would, for example, suggest that, providing other conditions are not limiting, enzyme synthesis should proceed at its maximal rate immediately subsequent to adsorption of in- ducer. Further, once inducer molecules are adsorbed, one would not expect on a priori grounds to find the emergence of any strikingly different properties of the EFS as a consequence of the accumulation of enzyme molecules. It is not too difficult to marshal evidence pointing up the inadequacy of such activator mechanisms as suitable models of induction. We may now consider the nature of this evidence 131 S. SPIEGELMAN AND A. M. CAMPBELL with a view to seeing whether it circumscribes the nature of the induction mechanism sufficiently to serve as a useful guide in the construction of a more suitable model. THE KINETICS OF ENZYME SYNTHESIS AND ITS INTERPRETATION One of the most obvious ways of examining the adequacy of mechanisms analogous to the activator hypothesis is in terms of its kinetic consequences, and historically this was the first type of data provided. The kinetics found for the induced synthesis of maltase and galactozymase in yeast were found to be auto- catalytic and could be accurately described by the logistic equa- tion (71,72). Subsequently other systems were found to obey the same kinetics (41). The results obtained suggested that in the early phases of the induction, enzyme-forming capacity increases as new enzyme molecules are produced. The data are clearly inconsistent with a simple activator hypothesis, and on the same ground the Yud- kin mass action model (103) for inducer function was rejected (71), since it also predicts maximal rates of enzyme formation from the onset of induction. To explain the autocatalytic kinetics, as well as certain data of a genetic nature to which we will have reference below, the so-called "plasmagene" hypoth- esis was proposed (72). In this it was assumed that the in- ducer functions by stabilizing a complex between enzyme and the "plasmagene" and that this complex is capable of replicat- ing itself and producing enzyme. The widespread implica- tions of this hypothesis and the admittedly limited experimental support available at its formulation acted as a stimulatory irritant. Equally plausible alternatives for explaining the logistic kinetics were quickly offered by a number of authors. Thus, it has been argued (53) that enzyme formation was being followed in these studies employing metabolizable inducers which could serve as an energy source. Under such circum- stances, obviously the more enzyme there is present, the greater is the rate of energy generation, and the more rapid therefore 132 INDUCED ENZYME FORMATION would be the formation of enzyme. As a consequence, the kinetics of enzyme formation would be autocatalytic independ- ently of the actual kinetic details of the enzyme-forming process. Although eminently plausible, it was pointed out (76,90) that an argument of this nature could not be used to explain away the autocatalytic formation of hydrogenlyase, the functioning of which could hardly yield sufficient energy for protein synthesis. Further, this criticism turned out on subsequent investigation (35) not to be applicable to the system against which it was directed. An examination of the relation between the kinetics of enzyme formation and the rate of energy supply revealed that alpha-glucosidase synthesis is exponential only when the rate at which energy is delivered exceeds a certain critical value. Below this it is linear with time. Thus, if one actually performs the induction in such a manner (e.g., anaerobically, with highly purified maltose) as to insure that the inducer is the sole energy source, linear and not autocatalytic kinetics are obtained for the early phases of the induction. The original experiments were performed aerobically under conditions in which a relatively high endogenous respiration was the principal energy source, the contribution of inducer metabolism being negligible. Monod and Cohn (55) have quite correctly emphasized that wherever possible, the complications which can attend the utilization of an energy-generating inducer should be avoided by the use of what they call "gratuitous induction." Conditions of gratuity require the use of a nonutilizable inducer and a neutral noninductive energy source. The discovery that alpha-methyl- glucoside is a nonutilizable inducer of the alpha-glucosidase system made it possible to reexamine the question of the kinetics of alpha-glucosidase synthesis under gratuitous conditions. Again exponential kinetics were obtained (35). There exists another interesting possibility which, if it ob- tained, would make interpretation of the kinetics of induction difficult and uncertain. This stems from the fact that in following the appearance of enzyme in a population cell, an over-all average property is measured. Were the process of enzyme 133 S. SPIEGELMAN AND A. M. CAMPBELL synthesis in individual cells relatively more rapid than the time of the experiment, and if a lag period in the onset of enzyme forma- tion were normally distributed in the cell population, one would obtain a cumulative curve of enzyme with time which would have the appearance of a logistic. Benzer (8) was able to dem- onstrate that this was not true under conditions of gratuity by the ingenious use of bacteriophage as a tool. The virus was employed here both to stop enzyme formation and to release the enzyme by lysis of those cells which had accumulated enough enzyme during the period of induction to support virus multi- plication. Using this device he demonstrated that enzyme synthesis is uniform in all cells in gratuitous inductions but is heterogeneous if the inducer is the primary or sole energy source. This question has not been completely resolved in yeast. An interesting attempt to do so was, however, made by Terui and Okada (97), who photomicrographically examined the distribution of the division times in a population of cells in which the energy required for the division was derived from the in- ducing substrate maltose. They come to the conclusions that the kinetics of the over-all adaptation is explainable on the basis of a normal distribution of lag times in the population. There are certain features of the experiment which make for uncer- tainty. By its very nature, it is performed under nongratuitous conditions which, according to Benzer's results, lead to inhomo- geneities. Further, onset of division may not be an adequate measure of induction level. Finally, as has already been noted, it is relatively easy to change the kinetics of enzyme formation in the very system these authors studied from the logistic to one which is linear with time. Whereas one can explain logistic kinetics on the basis of a normal distribution of lag times, it is virtually impossible to explain linear kinetics on a similar basis, since it would involve assuming a completely unrealistic dis- tribution. Monod, Pappenheimer, and Cohen-Bazire (56) examined the kinetics of beta-galactosidase formation in E. coli by the use 134 INDUCED ENZYME FORMATION of an interesting device involving a relative plot in which in- crement in enzyme is plotted against increment in cell mass. This procedure has many advantages for studying relative synthetic rates, since direct comparisons can be made between slow- and fast-growing cultures. The data provided by certain inducers yielded linear curves when plotted in this manner. They suggest, therefore, that their findings are not consistent with an autocatalytic mechanism. It should be noted, however, that whereas the relative plot is extremely useful for the study of relative rates of synthesis, it is a comparatively insensitive pro- cedure for the kinetic examination of the early phases of the induction. The time interval required for a definably measur- able increment in mass could well be long enough to make im- possible the examination of the kinetically interesting period of induction. That this is not a remote possibility is easily shown with yeast which form enzyme quite a bit more slowly than bac- teria. If the data of yeast induction are plotted relatively, a linear phase is observed. However, the early points show an exponential departure from linearity. Were attention confined solely to the later points, complete agreement with the data of Monod, Pappenheimer, and Cohen-Bazire would have been obtained. Finally, it must be noted that recent information on inducer fixation (15) in the beta-galactosidase system is difficult to reconcile with linear kinetics. A word may be interposed here about time linear kinetics since a number of authors have taken its existence to nullify the significance and interpretability of the autocatalytic type. It is a fact that one can convert a synthetic reaction which is in- herently autocatalytic to one which is linear with time, and the possibility should neither occasion surprise nor engender con- fusion. Thus, there is little doubt that under the usual con- ditions the growth of bacterial populations is exponential. Nevertheless, linear growth of a streptomycin-requiring strain was reported by Schaefer (67). In discussing this observation Monod (52) pointed out that a similar type of kinetics should be obtainable artificially by establishing a constant limited supply 135 S. SPIEGELMAN AND A. M. CAMPBELL of an essential metabolite. He thus forecast his own discovery (51) of the "bactogen" as well as the independent development by Novick and Szilard (57) of what they call the "chemostat." It is not surprising that whenever limitations are imposed, whether they be of energy (35), inducer (60), or of a required metabolite, linear rates of enzyme synthesis are observed. One must therefore agree that enzyme synthesis need not be always autocatalytic. However, linear and other (24) deviations from autocatalytic kinetics may signify the presence of restrictions which prevent the exhibition of the exponential kinetics of which the system is capable. In any case, such deviations cannot be accepted as compelling evidence against the existence of exponential rates of enzyme formation. The presence of a rising rate of enzyme synthesis means that some self-reinforcing activation of the enzyme-forming system is occurring during the induction. A further analysis of the mechanism and the role of the inducer in it requires the application of other analytical devices. One of these approaches is genetic, and we turn now to the data derived from its use. THE INHERITANCE OF ENZYME-FORMING CAPACITY AND ITS SIGNIFICANCE FOR THE ROLE OF THE INDUCER Kinetic arguments, no matter how refined, cannot of them- selves be decisive. It was fortunately possible to examine the question of the autocatalytic nature of enzyme formation by completely different means and one which provided a more subtle and surprisingly fruitful method for further probing into the question of inducer function. The potentiality of examining induction by essentially genetic methods was suggested by the discovery of a new and pathological type of induction. Winge and Roberts (102) labeled their new phenotype "long term adapter" because it was much slower in adapting to galactose than the normal type. They further showed that the "slow" character was determined by an allele (g^), which was recessive to the wild type (G). Spiegelman, Sussman, and Pinska (89) undertook an an- 136 INDUCED ENZYME FORMATION alysis designed to uncover the mechanism underlying the "slowness." They came up with the surprising finding that the vast majority (99.9%) of ^s"Cell populations were noninducible. When plated on galactose-EMB test plates they yielded small negative clones. If the one out of a thousand positives were not simply mutants, a situation of signal significance would be available, for it would mean heritably different enzyme-forming capacity against a constant genetic background. This turned out to be the case since fluctuation tests designed to determine the nature of the origin of the positives were inconsistent with a mechanism involving random mutation. The Poisson variance obtained strongly suggested that contact with galactose was necessary and induced in a small proportion of the cells a heritable modification leading to the ability to form the enzyme. Once acquired, enzyme-forming ability was transmitted in- definitely from one cell generation to the next, providing galactose was present. However, growth of the positive cells in the absence of the substrate resulted after six or seven generations in a mass reversion to the original negative phenotype. The mass reversion feature virtually eliminated any mutational interpretation of the phenomenon. A detailed examination of the kinetics of the reversion was made. The data obtained were most simply explained by as- suming that positives contained units necessary for enzyme for- mation lacking in the negatives. These units or elements could increase only in the presence of the inducer galactose. Growth of positives in the absence of galactose leads therefore to a dilution of the relevant units, and a point is finally reached at which cells are produced possessing either none or an insuflRcient number of these elements. The nature of the conclusions and the potential usefulness of the system for the study of the formation of enzyme-synthe- sizing units warranted an attempt to obtain more critical evi- dence. A more directly interpretable analysis of the nature of the reversion phenomenon was undertaken (79) by the serial isolation and characterization of single-cell progeny produced by 137 S. SPIEGELMAN AND A. M. CAMPBELL positives during division in the absence of substrate. These single-cell analyses confirmed the earlier experiments cited, in demonstrating that abruptly after about five generations cells of the negative phenotype are produced with increasing frequency. The data were uniquely amenable to a probability analysis. It was found that a fully induced positive cell contains in the neighborhood of a hundred particulate units and that the minimal number of particles required for a cell to exhibit the positive phenotype on a test plate is in the neighborhood of one. The probability of a given particle passing into the daughter cell was closely approximated by one half. It proved further possible to offer evidence for the extrachromosomal nature of the particles in this particular instance by the comparative study of the transmission of the enzyme-forming capacity during reductional segregation (78). The method used was identical to that employed in a previous study involving the inheritance of the ability to ferment meli- biose (86), with a similar result. The effect of prior induction of (Gg^) heterozygotes to galactose on the segregation of the capacity to form the enzyme was studied. Noninduced hetero- zygotes, with few exceptions, yield a 1 : 1 ratio of positive to negative spores on galactose test plates. However, if the heterozygotes are induced prior to segregation, and the latter occurs in the presence of substrate, all four segregant spores exhibit the positive phenotype in over 90 per cent of the asci dissected. Growth in the absence of substrate for seven to twelve divisions of four such positive spore clones, leads to a reversion of two of them to the negative phenotype, thus re- storing the Mendelian ratio of the phenotype. The fact that homozygous recessives carried through the same procedure do not yield positive spores suggests that the presence of both the dominant gene G and the substrate leads to the uniform pro- duction of the extrachromosomal elements which are necessary for enzyme formation. When, in the course of the segregation, elements are incorporated into the cytoplasm of spores carrying the g^ allele, they are converted to the positive phenotype. The 138 INDUCED ENZYME FORMATION abrupt reversion of such positive cultures to the negative pheno- type upon growth in the absence of inducer is in agreement with the previous studies noted. The autocatalytic property of the enzyme-forming system or some necesssary portion of it is here dramatically illustrated in terms of the transmission of enzyme-synthesizing capacity from mother to daughter cell. At least one is needed to make more since, if by chance a cell is produced with none, it and its progeny are negative. The results obtained on the inheritance of the ability to form galactozymase parallel in many respects the prior investi- gations of Ephrussi (23) and his co-workers into the "petite" mutant. The data of these workers also suggest the existence of randomly distributed particulate elements in the cytoplasm pos- sessing autocatalytic properties and responsible for the produc- tion of cytochrome oxidase. The autocatalytic nature is again exhibited by the spontaneous occurrence of cells lacking the particles which lead to the irreversible loss of the ability to form the corresponding enzymes. It has been possible to demonstrate (89) that the particu- late elements involved in the two instances are distinct en- tities, since the two enzyme-forming capacities are lost sepa- rately. In the "petite" mutant case control of the number of elements of the cell is apparently not achieved by variation of inducer availability. However, cells lacking particles can be produced by treatment with the acridine dye, euflavine. It is of interest to note that Slonimski (69,70) has been able to demon- strate that this compound which is so effective in preventing the transmission of the particles from mother to daughter cells also specifically inhibits their ability to form enzyme. One can go beyond an independent exhibition of the autocatalytic nature of the enzyme-forming mechanism. The possibility of controlling active particle numbers in the case of the slow adaption to galactose provided an experimental system which permitted a further analysis on the role of inducer and its relation to the active particles and enzyme. 139 S. SPIEGELMAN AND A. M. CAMPBELL Let US first consider an hypothesis (55) which would explain the autocatalytic property in terms of enzyme function analogous to that advanced to explain the kinetic data. Under this hypothesis, the possession of a small amount of galactozymase can efTect the generation of more galactozymase by virtue of the fact that this enzyme system is involved in the energy-generating mech- anism to the cell. The role of the galactozymase in this hy- pothesis is confined to the supply of energy. The active particles would then be "aggregates" of sufficient amounts of galacto- zymase to serve as energy generators. Campbell and Spiegel- man (11) used a respiratory deficient strain to demonstrate that functional enzyme is lost long before the autocatalyst necessary for further enzyme synthesis, and hence these two cannot be identical. The quantitative results which were obtained in the study of the reversion from the positive to the negative state led to the formulation of a relatively precise hypothesis concerning the detailed nature of the reversion process. The hypothesis may be summarized in the form of the following series of statements : ( 7) the distribution of active particles among cells is assumed to be normal, (2) during growth in an inducer-free medium these particles neither decrease nor increase in absolute number and hence the average number per cell decreases exponentially, (3) the particles are distributed at each division randomly with equal probability to the mother cell and to the bud, and (4) the minimal number of active particles that a cell must contain in order to score as a positive is close to one. These properties were derived solely from a study of the transformation from the positive to the negative state. Anal- ysis of the reverse process quickly led to other features which illuminated further details of the process. Rotman and Spiegel- man (65) were able to convert a large percentage of negatives to the positive phenotype by treatment with fractions of yeast extract. It was possible to show that each of the positive cells so obtained acquired only a few active particles as a result of the conversion. On the basis of the properties of the conversion it 140 INDUCED ENZYME FORMATION was proposed that the transformation of a negative into a posi- tive cell does not involve the de novo formation of active particles but rather the activation of preexistent inactive units. We thus have two categories of particles, active and inactive. A third type was revealed through an analysis by Campbell and Spiegel- man (10) of the growth of active particles. This third kind is intermediate to the active and inactive varieties and is charac- terized by being easily converted by inducer to an active unit — an event which is rare with the inactive particles. We will designate this intermediate type as convertible particles. Their presence is indicated by an abrupt rise in active particle number when reverting positive cells are exposed to inducer. Subsequent increase of active particles obeys an approximately exponential law. The convertible particles occur with increasing fre- quency as positive cells are allowed to go through dilution growth in the absence of inducer. Further, they appear to suffer decay, since if they are not brought into contact with in- ducer soon after their appearance, activation by inducer is no longer possible. Another peculiar feature which emerges from a study of the late portion of the reversion is an anomalous change in stability of active particles. It was shown in one of the earlier studies noted (89) that active particles are perfectly stable in the early reversion divisions. However, it was found (81) that this stabil- ity disappeared after about the seventh division in the absence of inducer. A Model of Enzyme-Forming System Relating Template, Enzyme, and Inducer In discussing the information derived from genetic ex- periments we have deliberately used such neutral words as particles, units, and elements. We should now like to essay a synthesis of the biochemical, kinetic, and genetic information we have reviewed thus far in terms of the simplest model consistent with the known observa- tions. 141 S. SPIEGELMAN AND A. M. CAMPBELL The model to be presented is essentially the one designed by Campbell and Spiegelman (10) in an attempt to explain certain paradoxical aspects of the growth kinetics of active particles in long-term adapting stocks. Its major features are most easily seen and developed in terms of "slow" induction. Once these have been exposed, the scheme will be generalized and applied to normal enzyme synthesis. The biochemical investigation of the precursor aspect of enzyme synthesis leads to the conclusion that a template is involved. The kinetics of normal induction and the genetic data obtained with the aid of "slow" strains both suggest that induction is characterized in its early stages by an autocatalytic activation. All the data can therefore be described in a unified fashion by the assumption that initially the templates are rel- atively inactive and are autocatalytically converted to full activity during the course of the induction. We are thus led to identify the autocatalytic active particle defined by the genetic operations with the autocatalytically activated template demanded by the biochemical studies. We now inquire where in our model is the inducer likely to fit and how it is to function. Both kinetic and genetic experi- ments indicate that active templates increase in number during growth in the presence of inducer. Removal of the inducer results in complete cessation of the increase, but the number present at the moment of removal remains constant for many hours. In our opinion the simplest explanation which can be offered to explain this effect is that inducer, or some derivative of it, is irreversibly incorporated into the structure of the active template. If one proceeds along this line of reasoning, one difference between an active template and an inactive one would be that only the former contains galactose. However, if this were the only difference, exposure to galactose should con- vert negative "slow" cells into positive ones, because in one generation half of the templates would have been formed in the presence of galactose. This suggests then that an active tem- plate differs from the inactive form in some property other than 142 INDUCED ENZYME FORMATION the possession of the inducer. The possibiHty is therefore pro- vided for a third template type, neither active nor inactive, possessing the second property but not the galactose. A de- scription is thus provided for the "convertible" template, which becomes stabilized in the active form on the addition of inducer. We now turn to a consideration of the likely nature of this ''second property" possessed in common by active and "con- vertible" templates, but lacking in the inactive variety. For simplicity and ease of following the argument, we may here summarize the properties which any model constructed on the basis of the above discussion must exhibit. /. Each cell contains a certain number of templates specific for the synthesis of some enzyme of the galactose system. They may exist in "active," "inactive," or "convertible" forms. 2. A cell containing one or more active or convertible templates will give rise within a few hours of growth in a galac- tose medium to progeny in which most or all of the templates are active. 3. A cell containing no active or convertible templates may grow for many generations on galactose without any tem- plate ever becoming active. If activation does occur it is a rare event. It is heritable on the cellular level as required by property (2). 4. Active templates differ from convertible ones in that the former contain galactose. Convertible templates are readily transformed to active ones by the addition of galactose. 5. Active templates form the enzyme mentioned under (7) ; inactive ones do not. From properties (2) and (J) it is clear that the presence of some active templates in the cell greatly accelerate the activa- tion of other templates. Whether this includes other templates already present or only those subsequently formed is not de- ducible from the data. The question is, however, how this activation might take place. The two simplest possibilities are {a) the active templates self-duplicate, the new ones being, so to speak, descended from 143 S. SPIEGELMAN AND A. M. CAMPBELL the one originally present and (b) active templates produce some- thing which activates inactive templates. Both may operate; however, the functioning of the second mechanism is directly implied by the experiments of Rotman and Spiegelman (65) which show that inactive sites preexist and can be converted to active ones. Under the circumstances, the self-duplicating property can be abandoned as being superfluous for a descrip- tion of enzyme-forming system as a protein-synthesizing machine. What the active templates might produce which would activate other ones is also not deducible from the data. However, the only thing the template can be presumed to produce hetero- catalytically is enzyme. One is then led from this model to conjecture that the enzyme molecule itself is the activator of inactive templates. The picture of the mechanism emerging is clear, and we may now generalize and formalize it. Let us denote the relevant templates by T, inducer molecules by I, and enzyme by E. We postulate then the following. 7. When cells have been grown for many generations in the absence of inducer, their templates are all, or nearly all, in the simple and inactive form T. 2. The complex T-E is unstable and can occur in either one of two ways. In a noninduced cell each T has a small probability of fabricating spontaneously an enzyme molecule. Secondly an induced cell allowed to grow in the absence of in- ducer will, when the inducer is sufficiently diluted, produce T-E from decomposition of the inducer-T-E complex, mentioned in the next statement. 3. The reaction T-E + nl > T-I„-E is rapid and relatively irreversible. Here, n is the number of inducer molecules bound per T-E complex; n may be unity in some cases and greater in others. 4. A population of cells grown in an inducer-containing medium has most, or all, of its sites in the form of T-I„-E. 144 INDUCED ENZYME FORMATION 5. Of the forms mentioned above, only T-I„-E can effec- tively and rapidly catalyze enzyme synthesis. In the nomenclature of Cohn and Monod (18) T would be an apo-organizer, I, a co-organizer; and T-I, an organizer. The complexes T-E and T-I„-E represent new entities not embraced or employed by their terminology. The reversion from positive to negative in "slow adaptors" can be interpreted in terms of the above model in the following manner. As soon as growth in a galactose-free medium occurs, all newly formed templates appear as either T or T-E and con- sequently no enzyme synthesis takes place at them. The tem- plates which were present initially remain as T-I„-E and con- tinue to synthesize enzyme. They are the autocatalysts or active particles and are diluted out by growth. As the reversion growth proceeds, one gets, as a result of the consequent dilution of inducer, some convertible particles, T-E. The ultimate and irreversible decay of active particles if the reversion proceeds too long receives therefore simple explanation in terms of the in- stability of T-E. The anomalous change in stability of active particles (mentioned at the end of IV, B) which occurs late in the reversion is explained simultaneously. The conversion to the positive state occurs when a cell con- taining one or more templates of the form T-I„-E or T-E is placed in a medium containing inducer. Any T-E complexes are first converted to T-I„-E and then in both cases free enzyme is formed. By virtue of the enzyme produced other templates can be rapidly converted to the stable T-I„-E state, provided excess inducer molecules are present. The infrequent spon- taneous production of positives from negatives in the "slow" strains might be explained on the basis of the rare occurrence of enzyme formation by unoccupied T or T-I„. The novel function attributed to the enzyme and inducer molecules recalls the formally similar hypothesis of the "plas- magene theory." It should be emphasized, however, that the present model exploits a "feed-back" feature which was ac- tually inherent in the plasmagene model but not used. It is the 145 S. SPIEGELMAN AND A. M. CAMPBELL recognition that enzyme molecules can serve to activate un- occupied templates that permits an explanation of autocatalysis which does not invoke self-duplication. There are no data existent to our knowledge which demand this latter property as an integral part of the enzyme-forming process. It would, however, seem necessary to retain self-duplication as a method of tem- plate maintenance to explain the instances of cytoplasmic trans- mission noted, particularly in the case of the "petite" mutants. Stages in the Induced Formation of Enzyme and Their Interpretation The particular appeal of the model just proposed lies in the fact that it is in principle applicable to systems other than "slow adaptation" and permits an instructive interpretative compari- son among them. A central feature is the assumption that the active enzyme-synthesizing unit is the triple complex between template, enzyme, and the inducer. The difference between the slow adaptors and the normal variety will then be explained in terms of the very much lower probability of an unoccupied template of the slow type producing an enzyme molecule in the absence or the presence of inducer. In normal varieties this event occurs sufficiently frequently in the absence of inducer so that at any given moment it is highly probable that there is at least one T-E complex present per cell. This represents there- fore the constitutive mechanism for the synthesis of the low basal enzyme levels frequently observed in inducible strains. In the same vein, one can explain the so-called "constitutive mutants" (17,46) which make enzyme in inducer-free medium even faster than the normals do in the presence of inducer. Thus, one can suppose that "constitutive mutants" possess templates that possess an even higher than normal probability of spontaneously forming enzyme molecules. This has the ob- vious consequence that constitutive enzyme formation of this variety should more closely approximate noninduced enzyme synthesis. Some constitutive enzyme formation is of course referable to internal inducer production, as is beautifully shown 146 INDUCED ENZYME FORMATION by the work of Vogel and Davis (99) withA^-acetyl-ornithine deacetylase and by Stanier's (91) and Suda's (92) skillful use of sequential induction. It will be noted that comparatively irreversible combina- tions of inducer are assumed to occur only when both template and a replica are present. This situation possesses interesting predictive consequences which are sufficiently unique to permit experimental examination. It is evident immediately that the state of a noninduced cell, with the majority of its templates unoccupied by enzyme, should be very different from one which is induced to the condition where a considerable portion of the templates are already in the active state, and where enzyme mole- cules are freely available for the formation of new active com- plexes. In the first place, differences in response to inducer concen- tration in noninduced as compared with partially induced cells would not be unexpected. Induced cells would contain the T-E complexes permitting the relatively irreversible combination with inducer molecules. This is of course most dramatically exhibited by the long-term adapting instance. Here, no level of inducer concentration is capable of stimulating enzyme for- mation in the vast majority of cells. However, once this is suc- cessful and an induced cell is produced, normal inducer levels are sufficient to maintain enzyme formation indefinitely. An analogous difference can also actually be seen in normal enzyme formation. Thus, with alpha-methyl-glucoside as an inducer it is found that the concentration levels required to initiate induc- tion are considerably higher than those needed to maintain enzyme formation once it is started (77). The same observa- tion has been made independently by Monod (cited in ref. 15) and Spiegelman and Gilmour (81) with respect to beta-galac- tosidase synthesis in E. coli. Here enzyme formation does not commence at thio-methyl-D-galactoside levels of 1 X 10~^ A/ but will if the concentration is raised to 5 X 10~^ M. However, once enzyme formation is begun, 1 X 10~^ M is perfectly ade- quate to maintain the induction. 147 S. SPIEGELMAN AND A. M. CAMPBELL Pollock (62) has observed interesting differences between induced and noninduced cells in terms of sensitivity to ultra- violet. He found that prior to the onset of penicillinase forma- tion in the presence of inducer, enzyme synthesis is extremely sensitive to inactivation by exposure to UV. Once, however, enzyme formation has commenced, it becomes increasingly more resistant to this type of inhibition. Halvorson and Jackson (31) showed an exactly similar situation in the induced formation of alpha-glucosidase by S. cerevisiae. These are findings which are not unexpected if, as seems reasonable, empty templates are more sensitive to inactivation by UV than those combined with protein in a complex stabilized by inducer molecules. Finally, another difference between the induced and non- induced state has been observed (84) in terms of response to amino acid analogues. It has already been noted that it is pos- sible to stop enzyme formation by means of amino acid ana- logues. However, this inhibition is effective only if one adds the amino acid analogue in the lag period of enzyme formation, prior to the appearance of new enzyme molecules. If the induc- tion is allowed to proceed to the point where enzyme is already being formed, suppression of enzyme synthesis with the antag- onist becomes increasingly difficult (84). We can explain this apparently puzzling finding quite readily in terms of the model just proposed. In noninduced cells the analogue is competing with its homologue for an unoccupied position on the template. It is not surprising that the competitive situation for the antag- onist should be markedly modified when the empty templates are filled with enzyme, for of necessity homologous amino acids now sit bound at, or close to, the sites of competition. Our discussion of the biochemical, kinetic, and genetic in- formation available on enzyme induction has led us to postulate three components of the enzyme-forming system, inducer, pro- tein, and template. In any given case the first two can be reasonably well defined in terms of known chemical entities. We turn now to the question of the identification of the chemical nature of the third member of the triad, the template. 148 \ INDUCED ENZYME FORMATION The Chemical Nature of the Template A template which is to serve as a device for protein syn- thesis must be at least as complicated and as large as the molecule which it is forming. Other than the protein molecule itself, there are relatively few candidates one can propose which can satisfy the two criteria of size and informational complexity. With these restrictions in mind, the two known possibilities are deoxyribonucleic acid (DNA) and ribonucleic acid (RNA). In the following paragraphs we will briefly examine the available evidence for and against the possibility that one or the other of these substances is associated with the enzyme-forming mechanism. DNA AS A COMPONENT OF EFS Evidence from work with the transformation principles (39,105) offers convincing evidence that genetic information can be stored in and transmitted through DNA. The potentiality, therefore, of forming any specific kind of protein molecule must ultimately be referable to the DNA of the cell. The question, however, which we would like to entertain at present, is whether DNA is directly and personally involved in the synthesis of protein or whether it effects its influence via an intermediary. De- finitive evidence one way or the other is, at present, not available. Presumably, an unequivocal demonstration will ultimately emerge from experiments analogous to those being performed in the laboratories of Brachet (9) and Mazia (40,49) with enu- cleated fragments of ameba. At present, the best that can be offered is a series of experiments inquiring whether a correlation can be established between the metabolic activity or state of DNA and the act of protein synthesis. There exists a variety of experiments in which it is possible to demonstrate a complete dissociation of DNA metabolism from protein synthesis. DNA formation is known (1) to be far more sensitive to inhibition by radiation with x-rays than is protein formation. Baron, Spiegelman, and Quastler (5) have shown 149 S. SPIEGELMAN AND A. M. CAMPBELL that X-ray dosages far exceeding those expected to stop the for- mation of DNA completely permit normal enzyme formation in yeast. Similar dissociations have been achieved with other systems and by different means (30,58). Kelner's (43) studies on photoreactivation of E. coli fol- lowing exposure to ultraviolet have provided an elegant method for a virtually complete separation of RNA and protein forma- tion from net DNA synthesis. Halvorson and Jackson (31) employing yeast have recently repeated and confirmed these results. The results obtained suggest again that protein and RNA continue to be synthesized subsequent to UV doses which completely inhibit the DNA formation. Cohen and Earner (16) have reported the ability of a thymine-less mutant of E. coli which can synthesize xylose isom- erase in the absence of an added supply of thymine. This im- portant finding was confirmed in our laboratory (85) using the same mutant and examining beta-galactosidase-forming capac- ity. It was found that cells of this strain synthesized consider- able amounts of enzyme when suspended in a synthetic medium lacking thymine. This behavior is in striking contrast to tliat observed with mutants possessing other metabolic deficiencies. Thus, in our own experience and in that of others (56,58,85), adenine-less, uracil-less, or amino-acid-deficient mutants form little or no enzyme in the absence of the required metabolite. An interesting apparent exception to the information cited is that of Allfrey's (2) observation with isolated nuclei. He found that treatment with DNase suppressed the ability of his prepara- tions to incorporate labeled amino acids, whereas RNase had little or no effect. The situation observed here may, however, be a reflection of the low nuclear RNA content. If, as seems likely, RNA is derived from DNA, destruction of the latter would elim- inate protein synthesis in such systems. The data cited above demonstrate that drastic interference with DNA synthesis is often not accompanied by very striking effects on the formation of protein. Whereas such findings can- not eliminate DNA as an active component of the EFS, they 150 INDUCED ENZYME FORMATION hardly lend support to the supposition that it is. The credence assignable to such negative conclusions with respect to DNA gains further weight from similar experiments examining RNA metabolism which yielded strikingly different results RNA AS A COMPONENT OF EFS Many have postulated RNA as a key substance in protein synthesis. Chantrenne (14) has succinctly summarized such speculations and the supporting evidence. Here we would like to confine our attention to the information derived from the study of enzyme synthesis. Again, as in the case of DNA, correlative experiments have been performed with intact cells examining the effects on enzyme formation of agents or condi- tions which influence RNA metabolism. 7. Experiments with Ultraviolet Light. Swenson and Giese (94,95) demonstrated that exposure to ultraviolet dosages far exceeding those required to stop DNA formation, results in the inhibition of induced enzyme synthesis in yeast. Examination of the action spectrum of the inhibition revealed that it coincided with the absorption spectrum of nucleic acid. Halvorson and Jackson (31) extended these interesting observations. They examined the effects of various dosages on the synthesis of alpha- glucosidase, the ability to use free amino acid pool components, and the incorporation of P^^ into the nucleotides of RNA. Their results established an excellent parallelism between the loss in capacity to utilize the free amino acids and the ability to syn- thesize enzyme. It was further found (85) that even slight dam- age of RNA metabolism, as measured by ability to incorporate P^-, had profound effects on enzyme-forming ability. Thus, at a dose which achieved a 22 per cent inhibition of RNA metabo- lism enzyme formation was suppressed to the extent of 95 per cent. 2. The Effect of a Uridine Analogue on Enzyme Synthesis. One obvious approach which could in principle yield informa- tion pertinent to the role of RNA is to examine the effects of various analogues of uracil and its derivatives on enzyme forma- 151 S. SPIEGELMAN AND A. M. CAMPBELL tion. Ben-Ishai and Spiegelman (7) undertook such a study. One of the most effective compounds found was 5-OH-uridine, which the experiments of Roberts and Visser (64) suggest is able to prevent the utilization of uracil for the synthesis of RNA. The presence of as little as 5 /ig./ml. of this compound results in virtual cessation of beta-galactosidase formation by E. coli. Further, this inhibition can be achieved even if the OH-uridine is introduced subsequent to the addition of inducer, at a time when maximal rate of enzyme formation has been attained. Several illuminating facts emerged from these experiments. One was that the OH-uridine could effect a complete inhibition of beta-galactosidase formation at concentrations which had no effect on over-all protein synthesis. The apparent greater sensitivity of the beta-galactosidase-forming system suggests that it requires a larger effective supply of RNA precursors than other protein-synthesizing systems. A second fact of interest is the ability of the OH-uridine to prevent enzyme formation even after its onset. This would suggest that continued synthesis of RNA is required for the uninterrupted production of enzyme. The same conclusion is derivable from the observation (56,58) that, unlike the previously noted experience with thymine-less mutants, uracil-less mutants cease making enzyme immediately upon the exhaustion of externally supplied uracil. COMPETITIVE INTERACTIONS AMONG PROTEIN SYNTHESIS SYSTEMS FOR RNA PRECURSORS The marked response of the beta-galactosidase-forming systems to 5-OH-uridine and its interpretation in terms of an elevated requirement for RNA precursors suggest other types of experiments for exhibiting this kind of interaction. E. coli cells growing logarithmically in a synthetic medium with ammonia as the sole source of nitrogen do not accumulate a detectable internal pool of amino acids. The rate of protein formation is apparently limited by the synthesis of amino acids, since an immediate increase in growth rate follows the addition of an external supply of amino acids. It would be expected that the 152 INDUCED ENZYME FORMATION sudden stimulation of protein synthesis caused by the amino acid addition would exert an exhaustive demand on the meta- bolic devices which supply the derivatives needed for ribonu- cleic acid synthesis. In view of the suggested sensitivity of the beta-galactosidase-forming system to the supply level of the RNA precursors, the addition of amino acids might be expected to result in an inhibition of beta-galactosidase formation. This prediction is experimentally realized (30). Thus, the presence of inducer fails to stimulate enzyme formation if amino acids are added simultaneously. The suppression is virtually complete for a period of a half hour, following which some recovery of enzyme-forming capacity occurs. That the inhibition is re- lated to RNA precursor supply is supported by the ability of purine and pyrimidine bases to reverse it. This dependence of enzyme formation on an adequate supply of nucleic acid precursors has also been exhibited (7) in the case of alpha-glucosidase formation in S. cerevisiae In ad- diton to their free amino acid pool, yeasts also possess a consi- derable internal supply of nucleotides and their polyphosphate derivatives (68). It was found possible (7) to specifically de- plete the nucleotide pool by incubation in the presence of an ex- ternal supply of amino acids and energy. This treatment leads to a loss of enzyme-forming capacity while leaving the free amino acid pool intact. If cells are first partially induced and their nucleotide pool then depleted, they fail to form enzyme on being again exposed to inducer. If their nucleotide pool is, however, replenished, enzyme synthesis proceeds normally. These ex- periments illustrate in a different manner and with another sys- tem the apparent requirement that RNA synthesis be possible if enzyme formation is to continue. EXPERIMENTS WITH SUBCELLULAR FRACTIONS The experiments thus far described strongly implicate RNA as the template in the process of enzyme synthesis. They cannot, however, be taken as conclusive. It is painfully obvious that although interesting and perhaps even ingenious experiments can 153 S. SPIEGELMAN AND A. M. CAMPBELL be performed with intact cells, the distance between the data and the conclusions derived fr ^m them is too great for certainty. Definitive identification of the chemical nature and the mode of action of the template is not likely until the latter has been phys- ically isolated in a functional state. In vitro performance of its function by the isolated enzyme-forming system may be sug- gesting the impossible, since it demands even more than that which has already been accomplished in the case of transfor- mation in the bacteria. In the latter, genetically competent material has been separated from other cell c 3mponents. How- ever, the transforming principles have been asked to function only after reinsertion into an intact living organism. Nevertheless, that the ideal in vitro situation may be attain- able in the not too distant future is prophetically foreshadowed by the striking successes which have recently been recorded with subcellular fractions. Many of these deal primarily with in- corporations studies. To this extent it is uncertain that they necessarily represent model systems which will permit the further dissection of the protein-synthesizing mechanism. The data must therefore be interpreted with caution, but their uniqueness and potential value command consideration. Zamecnik and Keller (104) succeeded in preparing a mi- crosome fraction which actively incorporates amino acids when supplemented with some component of the supernate and an ATP-generating system. Subsequent work on the supernate fraction by Keller and Zamecnik (42) indicated the presence of an enzyme which generated guanosine-triphosphate, a deriva- tive of which functions in the insertion of the amino acids into peptide linkage. The work of Hoagland (37) and DeMoss and Novelli (22) strongly suggests that polyphosphate derivatives of nucleotides activate amino acids prior to their incorporation. Lester (48) and Beljanski (6) examined the ability of lysozyme-treated preparations of Bacillus megaterium to incor- porate amino acids labeled amino acids. Both authors found that treatment with RNase abolished this ability, whereas ex- posure to DNase was stimulatory. 154 INDUCED ENZYME FORMATION The most extensive investigation on the properties of sub- cellular fractions has come from Gale's (27,28) laboratory. In these studies cells of Staphylococcus aureus are disrupted by sonic disintegration and a fraction obtained by differential centrifu- gation which is relatively low in viable cells, and therefore pre- sumably in intact cells. Although it is unlikely that this prep- aration is homogeneous, it nevertheless is of the greatest in- terest, since it is amenable to enzymatic and extractive resolu- tion. Removal of the nucleic acid from such disrupted cell preparations leads to a marked lowering in their ability to in- corporate amino acids. This loss can be restored by the ad- dition of nucleic acids from the same species, DNA being more active than RNA on a dry-weight basis. This latter finding may be merely a consequence of the greater stability of DNA to isolation procedures. The data are consistent with the concept that the RNA made from the DNA supplied is the active agent. A most interesting recent development has been the dis- covery by Gale and Folkes (29) that the presence of specific di- and trinucleotides is extremely active in promoting the in- corporation of specific amino acids. Thus, for example, di- nucleotides containing adenine and cytosine can completely re- place the intact RNA in promoting the incorporation of aspartic acid. Indeed, on an equivalent weight basis the dinucleotide is more than a hundred times as active as the intact RNA. Inter- pretation of these findings is yet uncertain. It may indeed be, as suggested by Gale and Folkes (29), that these small fragments represent that part of the RNA template which is concerned with the insertion of the corresponding amino acid into peptide link- age. An argument which can be raised against this assertion stems precisely from the observed high activity of the dinucleo- tide. It seems unlikely that nucleotide pairs are sufficient to specify the relevant amino acids, since only 16 possibilities are uniquely determined. At least three bases of the RNA tem- plate would have to be involved in the specification of a given amino acid since 20 or more choices have to be made. This rea- 155 S. SPIEGELMAN AND A. M. CAMPBELL soning assumes, of course, that the four bases are the only com- ponents of the code. An alternative explanation of these findings can be offered. It may be that the active fragments of Gale-Folkes may, by transfer reactions, generate the nucleotide components func- tioning in the activating mechanism suggested by the work of Hoagland (37) and DeMoss and Novelli (22). Whatever the interpretation, it nevertheless remains true that these results are pregnant with many possibilities. As distinguished from incorporation studies, the attainment of protein synthesis has been reported in only two sorts of sub- cellular fractions. One is the system of Gale and Folkes (28) in which the development of "glucozymase," catalase, and the in- ductive formation of beta-galactosidase have been demon- strated. When these preparations are sufficiently resolved either by removal of RNA or DNA, it is found that both DNA and RNA stimulate the formation of both catalase and beta- galactosidase. Again, the relative high activity of the DNA may be a con- sequence of greater stability to extractive procedures. No limits to the potentialities of this system are apparent. It is difficult to believe that its further study can fail to provide defin- itive answers to the basic problems of template function and specificity. Another system which gives great promise of future fruit- fulness are the so-called "protoplasts" of B. megaterium. Wei- bull (100) showed that these could be prepared by treatment of cells with lysozyme in hypertonic medium. Wiame et al. (101) showed that these preparations were able to synthesize arabino- kinase as demonstrated by an increased Qoj during incubation. Simultaneously Landman and Spiegelman (44) isolated a lac- tose positive mutant of B. megaterium and devised a stabilizing medium for protoplasts which permits synthesis of beta-galac- tosidase. Virtually all of the enzyme-forming capacity is re- covered in the protoplasts. When supplemented with amino acids, hexose-diphosphate, and inducer, they synthesize enzyme 156 INDUCED ENZYME FORMATION at rates comparable to those of intact cells. The beta-galac- tosidase formed has been isolated in soluble form and purified. These preparations are amenable to enzymatic resolution, their enzyme-forming activity being abolished by RNase. This treatment does not destroy them physically but selectively re- moves 80 to 90 per cent of the RNA. It is evident that the search for a system which would per- mit the further experimental probing of protein-synthesizing systems is at present in an exciting but preliminary stage. There seems little doubt, however, that a new era is being opened which will ultimately permit a description in chemically defined terms of the nature of the protein-synthesizing machinery. Summary and Concluding Remarks We have here surveyed the data which have accumulated on the phenomenon of "enzymatic adaptation," with particular emphasis on the eff"orts of the past decade. In view of the com- plexity of the problem posed initially, and the difficulties which could easily have hindered understanding or led to irrelevant confusion, the progress which can be recorded is satisfying. Operationally diverse disciplines have provided the data from which a picture of the enzyme-forming mechanism has evolved. The kinetic, biochemical, and genetic information on induced enzyme production all lead to and can be interpreted in terms of one model. They suggest that the enzyme-forming system is a complex between RNA, inducer, and enzyme. The problem has been brought to the point where further questions must be posed in terms of the chemical structures and reactive interrelations of the components identified. From the experiments reviewed in the last section it would appear that the systems needed for the experimental resolution of precisely such questions are now well on the way to development. It seems likely at the present writing that the next decade will provide the necessary answers. Attention can then be profitably turned to the problem which initiated much of the work described, i.e., what is the nature of gene function? 157 S. SPIEGELMAN AND A. M. CAMPBELL References 1. Ahrdims^K., Arch. Biochem., 30,^)0 {\9S\). 2. Allfrey, V. G., Proc. Natl. Acad. Sci. U. S., 40, 881 (1954). 3. Anfinsen, C. B., and M. Flavin, Federation Proc, 12, 170 (1953). 4. Anfinsen, C. B., and D. Steinberg, J. Biol. Chem., 189, 739 (1951). 5. Baron, L. S., S. Spiegelman, and H. J. Quastler, J. Gen. Physiol., 36, 631 (1953). 6. Beljanski, M., Biockim. etBiophys. Acta, 15, 425 (1954). 7. Ben-Ishai, R., and S. Spiegelman, in manuscript, 1955. 8. Benzer, S., Biochim. et Biophys. Acta, 11, 383 (1953). 9. 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Med., 98, 373 (1953). 161 CERTAIN PROBLEMS IN THE BIOCHEMICAL STUDY OF DISEASE DeWITT STETTEN, Jr., National Institute of Arthritis and Metabolic Diseases, National Institutes of Health, Bethesda, Maryland The study of normal metabolic processes may be pursued with profit at many levels of biological organization, or, more precisely, of biological disorganization. The investigator may elect to employ the minimally disturbed intact animal, the iso- lated perfused organ or tissue of that animal, the sliced, teased, or minced preparation of such a tissue, the cell-free homogenate, or the solution of enzyme or enzymes. Each level, as here listed, represents a further degree of disorganization of an initially highly integrated system, and the disorganization is in each case im- posed by the experimenter. At each successive level of dis- organization something is gained in the form of greater simplicity, greater control over variables, greater facility in establishing the necessary components of the system or reaction under scrutiny. However, at each successive level of disorganization something of importance is also lost. It may be worth while to consider briefly what is lost as one proceeds with this dissection, first surgical and then chemical, of the intact organism. As an example, the functioning of the liver in situ is influenced by the normally continuous supply of substrates, the normally continuous removal of products of its 162 STUDY OF DISEASE activity. These operations depend in turn upon the activities of remotely situated organs and tissues. Remote organs also influence endocrinologically the function of liver in situ. In addition, other influences, nervous, circulatory, and thermal, remote in origin, may affect the functioning of the liver in its normal habitat. Isolation and perfusion of this liver at once eliminates many of these determinants of liver function. Humoral, including hormonal, regulation is now determined by the experimenter, not by the animal. Nervous regulation is usually lost. If the liver is now sliced and shaken in a bath, further loss of organiza- tion occurs. A fraction of the cells is necessarily incised, releas- ing normally intracellular contents to the extracellular fluid. The remaining cells are nourished in a rather haphazard fashion, splashing about in a vessel instead of being supplied with a steady flow of a regulated nutrient fluid pumped past each cell through a system of venous sinuses. The process under study is confined by the walls of the vessel, and unless special and elaborate condi- tions are fulfilled, the concentration of substrate continuously declines while that of product continuously rises. Homogenization of the tissue and disruption of the cellular architecture is still a further insult. The microscopically visible intracellular components, nucleus, mitochondria, nucleolus, and microsomes, all bear, in the intact cell, geometrical relation- ships to each other which are doubtless of functional significance in the intact cell and which are destroyed in the process of homog- enization. It may further be postulated that the submicro- scopic particles, the molecules of the soluble enzymes, are likewise in the intact cell not entirely free-swimming, but become so when the cell is disrupted. It is possible that in the geographical arrangement of enzymes within the cell resides the answer to the typically polar or unidirectional character of epithelial cells (14), and this is clearly lost in the process of homogenization. Finally, the separation and purification of individual enzymes from such a cell-free homogenate, though very rewarding, inevitably divorces the enzyme from such inhibitory or excita- 163 DEWITT STETTEN, JR. tory agents as may be closely associated with it in real life. Whereas the determination of the equilibrium constant of an enzyme-catalyzed reaction usually rests upon preliminary puri- fication of the enzyme, it must be recognized that within the cell within the liver within the peritoneal cavity of the intact animal, most reactions of interest in metabolic studies do not proceed to equilibrium. Indeed it is a characteristic of the living organism that in general it operates quite remote from the equilib- rium point. Disease, for purposes of the present argument, may be defined as the manifestation of alterations in metabolic processes. In some cases, such alterations are of a qualitative nature, involving the appearance in the organism of compounds which are appar- ently totally lacking in the normal animal. The presence of the abnormal hemoglobin found in sickle-cell anemia (15) or of the Bence- Jones protein of multiple myeloma (23) are ex- amples of such qualitative changes. In more cases, the change appears to be of a quantitative nature, involving alterations in the rates of normally occurring processes. The chemical change observed in such a patient is one of a deviation from normal in the concentration of some blood, urine, or tissue constituent, reflect- ing a change in the rate of production or of removal of some tissue component. The concentration of glucose or of uric acid in the blood may be elevated, the quantity of depot lipid may be in- creased, or the concentration of serum albumin may be lowered. The first question which is presented by such a situation is an analysis of the crude mechanism upon which the change in concentration depends. Most of the tissue constituents of interest in this regard are, in the normal subject, in a dynamic steady state, subject to an elegantly balanced turnover wherein the rate of generation is closely matched to the rate of destruction or elimination. A rise in the quantity of such a constituent may result equally readily from an increase in the synthetic rate or from a decrease in the rate of destruction. Conversely, either an increase in destruction or a decreased synthesis will result in a fall in quantity. It is today possible to design experiments, in 164 STUDY OF DISEASE certain cases, which will differentiate these two types of disturb- ances and to show, for instance, that diabetic hyperglycemia is a consequence chiefly of impaired glucose utilization, whereas the hyperuricemia in certain types of gout is a consequence of excessive production of uric acid. Such experiments are most securely conducted on the intact animal, and indeed, in the case of gout, the experimenter is restricted to man, since no analogous disease in experimental animals is available. The reasons for this preference for the intact animal lie in the fact that the disease process is itself a disintegration of some phase of that highly integrated system which is the organism as a whole. Any further disorganiza- tion imposed by the experimenter will necessarily confuse the picture and may obscure the primary disturbance which is due to the disease itself. Furthermore, the normal constancy of composition of the blood with respect to glucose, uric acid, al- bumin, etc., of the subcutaneous tissues with respect to lipid, or of the liver with respect to glycogen, fatty acids, or cholesterol is a resultant of many processes occurring in many tissues. The very separation of the several tissues may result in dis- appearance of the abnormality of rate the explanation of which is being sought. The foregoing argument must not be construed to mean that only experimental results derived from the intact animal are of use in the elucidation of disease processes. On the contrary, all levels of biological disorganization have con- tributed significantly to this body of knowledge. What is in- tended is merely to point out that of such results as are secured with isolated enzyme preparations or isolated tissues of diseased animals, only those which are compatible with observations on the intact diseased animal are of value in explaining the disease process. The contributions of the several experimental approaches may be exemplified by an analysis of the various abnormalities which may influence the concentration of glucose in the blood. Glucose enters the portal blood by intestinal absorption and since 165 DEWnTT STETTEN, JR. most of the dietary carbohydrate of mammals is polysaccharide, this implies a preliminary digestion. Glucose enters the hepatic vein by the hydrolysis of glucose-6-phosphate and this com- pound may in turn arise ( 7) from glucose itself, (2) from glucose- 1 -phosphate derived from glycogen or (3) from hexosediphos- phate arising in turn from triose phosphate, etc. These processes undoubtedly occur also in tissues odier than the liver, notably the kidney. Glucose may also arise hydrolytically within cells, and as an example of this process may be cited the action of amylo-l,6-glucosidase in muscle. This latter contribution is probably quite small. Glucose is utilized, so far as is known, by every mammalian cell. For blood glucose to be utilized, it must first cross cell membranes. It is generally held that simultaneously with or immediately succeeding such passage, glucose undergoes hexo- kinase-catalyzed phosphorylation. From the hexose phosphate thus produced at least four distinct metabolic sequences may arise. (1) Glucose-6-phosphate — ^ glucose- 1 -phosphate -^ glucosides (e.g., glycogen) or rearrangement products (e.g., galactose- 1 -phosphate). (2) Glucose-6-phosphate -^ 6-phosphogluconate, initiating the "oxidative pathway." (3) Glucose-6-phosphate — > fructose-6-phosphate, initiating the "glycolytic pathway." (4) Glucose-6-phosphate — ^ glucose + inorganic orthophos- phate. Of interest in this regard is the question of the possible utilization of glucose without preliminary phosphorylation. This view rests largely upon the demonstration of a glucose dehydrogenase activity in mammalian liver extracts which forms gluconic acid from glucose in excellent yield (6). Attempts to demonstrate the occurrence of this particular transformation in the intact animal have thus far yielded negative results (20). Provisionally this enzyme activity must be considered inoperative 166 STUDY OF DISEASE in the intact mammal, and its presence must be regarded as an unexplained biochemical curiosity. Whether hepatic glucose dehydrogenase is a vestigial compound or whether it is a truly important enzyme, the proper substrate of which has not been identified, remains to be determined. In addition to the foregoing fates, glucose may be lost to the mammalian organism in the intestinal and urinary tracts. In the intestinal tract, failure of adequate polysaccharide digestion or excessive bacterial fermentation deprives the mammal of a portion of ingested carbohydrate. Whereas normal sugar losses in the urine are negligible, these become significant if either the normal renal threshold is exceeded by an abnormal hyper- glycemia or normal blood is circulating through kidneys with an abnormally low glucose threshold. In consideration of the numerous sources and fates of blood glucose, it is certainly not surprising that there are many disease states which result in alterations, positive or negative in sign, of glucose concentration in the blood. Still other defects in one or another mechanism might be anticipated to produce alterations in blood glucose concentration but fail to do so as a consequence of homeostatic mechanisms that are invoked. Thus simple failure to ingest carbohydrate or failure to digest polysaccharide, as may occur in pancreatic disease or diarrhea, will not, in general, cause profound hypoglycemia. This is at least in part explained by a compensatory decline in glucose utilization by cells of the liver and is reflected in a diminished consumption of glucose for hepatic lipogenesis in the intact animal (3) as well as in the liver slice (24). Failure of the intestinal mucosa actively to transport glucose from the lumen to the portal blood is seen in sprue, and this situation also rarely leads to hypoglycemia. The site of the defect is readily demonstrable clinically, however, by the finding of a normal intravenous glucose tolerance in the face of a failure of blood glucose to rise after oral administration. It is noteworthy that the defect in sprue can be simulated by the application of phlorhizin to the intestinal mucosa (10). The liver normally supplements the intestinal tract as a 167 DEWITT STETTEN, JR. source of blood glucose. The immediate hepatic source of glucose is from the hydrolysis of glucose-6-phosphate in the presence of a specific glucose-6-phosphatase. Glucose-6-phos- phate arises in liver from various sources, and among these are glycogen, via glucose- 1 -phosphate, and such noncarbohydrate compounds as are capable of contributing organic fragments to the several intermediates of the glycolytic sequence and the citric acid cycle. These latter contributions derive ultimately from the glycogenic amino acids, glycerol, and other compounds, and the over-all process under consideration is termed glyconeo- genesis. Of the disease processes which influence the generation of glucose in the liver, the best defined is glycogen storage disease (von Gierke). In an elegant analysis of these patients (5), it has been shown that in many instances the defect is attributable simply to a relative or absolute deficiency of glucose-6-phospha- tase activity in the liver. Such an abnormality makes the liver, like normal muscle, incapable of contributing significant amounts of glucose to the blood, but in no wise interferes with the steps of glycogenesis. Other patients suffering from glycogen storage disease exhibit normal glucose-6-phosphatase activity but appear to deposit glycogen which deviates markedly from normal liver glycogen in its branching pattern. Such glycogen seems, in some cases, to be less readily degraded by the com- bined action of phosphorylase and amylo-l,6-glucosidase. A consequence of either type of glycogen storage disease is a failure to elicit the usual hyperglycemia in response to administered epinephrine. Recent evidence indicates that a mode of action of epi- nephrine, as well as of glucagon, is to favor the conversion of inactive phosphorylase into active phosphorylase (21). Whereas this finding, is, of itself, not a complete explanation of the mode of action of these agents, it is highly suggestive that these stimu- lants of glycogenolysis operate at the initial steps of glycogen breakdown. The failure of the blood glucose to rise in response to epinephrine in von Gierke's disease is best explained by the 168 STUDY OF DISEASE hypothesis either that the hexose phosphate which arises is not hydrolyzed or that, owing to its structural abnormahty, the glycogen is not sensitive to attack even by active phosphorylase. In this regard it is of interest that patients deficient in pancreatic islet a-cells, the apparent source of glucagon, have recently been described (11). Hypoglycemia was noted to occur in these subjects. Even assuming all the requisite enzyme systems in the liver to be intact, clearly if there is no glycogen in the liver, glyco- genolysis must cease to play a role as a source of blood glucose. Virtually total depletion of hepatic glycogen ensues upon relatively brief periods of inanition, and marked decreases in the content of glycogen in the liver have been observed in a variety of conditions, including exposure to low oxygen tension or intoxication with thyroxin or thyroglobulin. It follows that under these circumstances, hepatic glycogenolysis cannot be relied upon as a source of blood sugar. An apparently distinct mechanism which can be altered in disease but which also affects the rate at which the liver con- tributes glucose to the blood is gluconeogenesis. Profound changes may be elicited in the experimental animal, and analo- gous situations may be observed in clinical material wherein variations in adrenocortical activity result in changes in the rate at which amino acids are deaminated and glucose is formed. In general terms, the presence of excessive amounts of the 11- oxysteroids of the adrenal cortex results in the generation of large amounts of glucose from noncarbohydrate precursors (22), a rise in the total carbohydrate content of the organism, and incidentally a rise in blood glucose concentration. Conversely, in the adrenalectomized animal or Addisonian patient, with glucogenesis from noncarbohydrate sources impeded, hypo- glycemia may be encountered. In contrast to the state of present knowledge of the mode of action of epinephrine or of glucagon, no generally acceptable hypothesis can be offered to account for this action of the corticosteroids. Defects in the utilization of blood glucose are if anything 169 DEWITT STETTEN, JR. more frequent than defects in its sources and generation. Where- as all tissues in the mammal, so far as is known, are capable of assimilating glucose, attention has been directed largely to the liver and to the skeletal musculature. Although wide fluctuations in glucose utilization may be induced in these tissues by altera- tion of the hormonal or nutritional state, certain other tissues, e.g., brain, myocardium, fetus, appear to be insulated against drastic changes in rate of glucose consumption. Thus whereas the liver or muscle is sensitive to the concentration of circulating insulin, brain is not, although it obviously cannot tolerate extremes of hypoglycemia. The rate of assimilation of glucose by muscle is critically dependent upon the activity of the islets of Langerhans, the anterior pituitary gland, and possibly also the adrenal cortex. Space does not permit an analysis at this time of the various conflicting lines of evidence relating to the exact sites of action of the several participating hormones. For purposes of the present discussion it matters little whether the role of insulin is to release muscle hexokinase from a physiological inhibition (16) or to facilitate the entry of unesterified glucose from the extra- cellular space into the intracellular compartment of muscle (9). It will suffice, for the present argument, to select the area of agreement between the conflicting experiments and define the net result of insulin action as increasing the quantity of intra- cellular glucose-6-phosphate at the expense of extracellular, ultimately plasma, glucose. Similarly we need not concern ourselves too much, at this time, with the question of whether the anterior pituitary gland secretes an agent that directly inhibits hexokinase (16) or whether it interferes in some fashion with the operation of insulin which is bound to muscle (18). Growth hormone, or some biological product derived therefrom, appears to render muscle insensitive to the action of insulin in the intact animal. Again in the intact animal the situation is complicated by the fact that, in addition to influencing what is happening in mus- cle, each endocrine may exert influences upon other endocrine 170 STUDY OF DISEASE glands. An example of this situation is the finding of an increase in gluconeogenesis observed in alloxan-diabetic animals (7). These animals have enlarged adrenal cortices, and it is possible that this effect is not directly attributable to hypoinsulinism but is rather a consequence of a secondary hyperadrenalism. It is generally agreed today that the major effect upon blood glucose of hypoinsulinism is a decrease in glucose utilization by such tissues as liver and muscle. Conversely the primary effect of hyperinsulinism is an enhancement of glucose utilization in these tissues. Many of the complex consequences of diabetes may be explained upon this basis alone, in that, with the genera- tion of intracellular glucose-6-phosphate impeded, all products derived from glucose-6-phosphate, such as lactate, pyruvate, or CO2, will not be formed from glucose at normal rate. Other reactions, which are coupled to those of glycolysis less directly, such as peptide bond synthesis (8) and fatty acid synthesis (19,4), will also be retarded. There is ample experimental evidence that these effects are observed in the diabetic organism and are reversed by administration of insulin. Many diabetic patients require dosages of insulin far in excess of what is generally considered the production of the normal pancreas, and in various situations, most strikingly in severe ketosis, the insulin tolerance may increase enormously. Under these circumstances one must suppose that an "antag- onist" to insulin is present in undue amount in the blood (12) or tissues. Whether this antagonist is in the nature of a pituitary hormone (2), an antibody (1), or a specific destructive enzyme (insulinase) (13) remains to be determined. The last fate of glucose to be discussed is urinary loss. The normal operation of renal tubular reabsorption of glucose may be overwhelmed by excessively high concentrations of glucose in the blood. This may occur secondary to a variety of dis- turbances which interfere with glucose utilization, such as insulin deficit, or which cause excessive glucose production, such as excessive epinephrine or excessive corticosteroid. Further, the mechanism of tubular reabsorption may itself be defective 171 DEWITT STETTEN, JR. and result in renal glycosuria, as is seen in Fanconi's syndrome, or experimentally in phlorhizin poisoning. The purpose of the above discussion has been to stress that the concentration of glucose or of any other constituent of the Intestine' BLOOD GLU COSE Muscle Kidney Fig. 1. blood is the resultant of numerous vectors. Disturbances of any of these vectors may result in abnormalities of concentration but may also cause secondary disturbances in other vectors. If these secondary processes are compensatory in nature, analogous 172 STUDY OF DISEASE to negative feedback, homeostasis results. The secondary disturbances may, however, ampHfy the defect. As an example may be cited the nausea, emesis, and coma of diabetic ketosis, all leading to cessation of food intake and thereby contributing further to the ketosis. Such a situation is analogous to positive feedback, and if uncorrected, may lead to a fatal outcome. The several vectors that have been discussed in relation to blood glucose are diagrammed in Figure 1. The magnitude of vector A is determined by the abundance of ingested carbohy- drate, the duration and effectiveness of intestinal digestion, and the integrity of the intestinal mucosa. It may be markedly diminished in starvation, in disease of pancreatic acinous tissue, or in sprue. Vector B depends upon a supply of hepatic glyco- gen of normal constitution and an intact enzyme system to convert it to glucose. It is exaggerated by excess epinephrine or glucagon and is diminished in von Gierke's disease. It is like- wise influenced by the gluconeogenic rate which is in turn under adrenocortical regulation, is diminished in Addison's disease, and is exalted in hyperadrenalism. Vectors C and D depend critically upon insulin, the anterior pituitary gland, and possibly other anti-insulin agents. Both of these vectors decrease in diabetes and are exaggerated in hyperinsulinism. Vector E depends upon the concentration of glucose in the blood and the integrity of the enzyme architecture of the renal tubule. This analysis of factors affecting the concentration of blood glucose in health and disease is of course merely exemplary. Given suflficient information, the deviation from normal in the concentration of any tissue constituent might be subjected to a similar analysis. It is the purpose of this discussion to emphasize the complex and highly integrated nature of the normally operating intact organism and to point up the difficulties in- herent in the elucidation of the disturbances which are en- countered in clinical medicine. Much has been learned about diabetes from comparative studies of liv^er slices (4) or enzyme solutions (17) derived from normal and from diabetic animals. The ability of such prepara- 173 DEWITT STETTEN, JR. tions to synthesize fatty acids is far less if they are derived from diabetic rather than normal animals, and these findings are compatible with what is known to happen in the intact animal (19). It is probably incorrect, however, to refer to such prepara- tions as "diabetic liver slices." If by "diabetes" is meant the relative or absolute deficiency of insulin, then all liver slices, regardless of source, are necessarily diabetic. The difference between isolated livers from diabetic and nondiabetic animals is chronological, not diagnostic. Slices prepared from livers of pancreatectomized or alloxanized animals have been deprived of their source of insulin, have been "diabetic," for a somewhat longer period of time than have similar slices prepared from tissues of a normal animal. 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Chem., 200, 851 (1953). 175 THE HORMONES, THEIR PRESENT SIGNIFICANCE, THEIR FUTURE GREGORY PINCUS, The Worcester Foundation for Experimental Biology, Shrewsbury, Massachusetts Introduction With the accelerating increase of our knowledge of the biochemistry of the hormones, any summary assessment of their role as biologically active substances is fated to be overmiserly in description and hazardous in extrapolation. The descrip- tion is overmiserly not merely because of the necessity for con- densation, but also because the acquaintance of any single in- dividual with the diverse and heterogeneous fields of investi- gation involved is bound to be limited. The extrapolation is hazardous because one is in the position of a mathematician attempting to write the equation of an S-shaped curve which has not yet exhibited its inflection point. To compensate to some extent for inadequate acquaintance with all the data, this writer will confine his observations to animal hormones and chiefly to those which are active in mammals, and as a substitute for pre- cise extrapolation he will offer speculations as well based as pos- sible on established fact. To indicate the diversities which confront any student of hormonology I have compiled Table I, which lists those sub- stances having fairly established claims to being active internal secretions in animals. A number of additional substances 176 HORMONES TABLE I A List of Animal Hormones, Their Chemical Nature, and Some of Their Biological Activities Name Tissue of origin Chemical nature Growth and de- Corpus cardia- Unknown velopment (GD) cum, ring hormone gland, prothoracic gland JuvenUe hormone Corpus allatum, Unknown ring gland Stimulant of GD Brain Unknown secretion Insect gonad stim- Corpus allatum Unknown ulant Voltinism hor- mone Stimulants of chromatophores Subesophageal ganglion X-organ, sinus gland, central nervous system Unknown Intermedin-like polypeptides Retinal pigment- Central nervous Unknown stimulating hor- system mone Molting inhibitor X-organ and sinus gland Crustacean gonad X-organ and stimulant sinus gland Secretin Pancreozymin Cholecystokinin Enterogastrone Intestinal mu- cosa Intestinal mu- cosa Intestinal mu- cosa Intestinal mu- cosa Unknown Unknown Polypeptide Unknown Unknown Unknown Principal known biological activities Facilitates metamor- phosis in insects Inhibits adult differ- entiation in insects Induces GD hor- mone secretion in insects Stimulates female gonad activity Causes diapausing eggs Induce lightening or darkening of pig- mented end or- gans in Crustacea Stimulates contrac- tion and disper- sion of retinal pig- ment granules in Crustacea Prevents molting in crustaceans Stimulates gonad ac- tivity in crusta- ceans Stimulates secretion of pancreatic juice and bile Enhances secretin ef- fect Stimulates gall blad- der contraction Inhibits gastric mo- tility Continued 177 GREGORY PINCUS TABLE I {Continued) Principal known Tissue of Chemical biological Name origin nature activities Vasopressin Posterior pitui- Polypeptide Antidiuretic, periph- tary eral vasocon- strictor Oxytocin Posterior pitui- Polypeptide Stimulates uterine tary muscle contrac- tion Insulin Pancreas /3-cells Protein Hypoglycemic, gly- cogenic Glucagon Pancreas a-cells Protein (?) Hyperglycemic, gly- cogenolytic Thyroid hormone Thyroid gland Tetraiodothyro- Increases tissue oxy- nine in thyro- gen consumption globulin Parathyroid hor- Parathyroid Unknown (per- Regulates calcium mone gland haps one or and phosphate more polypep- metabolism tides) Epinephrine Adrenal medulla Catechol amine Vasoconstrictor, gly- cogenolytic Norepinephrine Adrenal medulla Catechol amine Vasoconstrictor, neurohumoral Cortisol Adrenal cortex 11,17,21-Hydroxy- Glycogenetic, anti- lated progester- phlogistic, thymo- one lytic, protein cat- abolic Corticosterone Adrenal cortex 11,21-Hydroxy- Glycogenetic, thy- lated progester- molytic, protein one catabolic Aldosterone Adrenal cortex 11,21-Hydroxy- Sodium-retaining, lated, 18 alde- weakly thymolytic hydic progester- one Deoxycorticoster- Adrenal cortex 2 1 -Hydroxylated Sodium-retaining, one progesterone potassium-excret- ing Hydroxyandros- Adrenal cortex 11 -Hydroxylated Weakly androgenic tenedione A*-androstene- and protein ana- 3,17-dione bolic Testosterone Testis 1 7-hydroxylated- Androgenic, protein A*-androstene- anabolic 3-one 178 HORMONES TABLE I {Continued) Principal known Tissue of Chemical biological Name origin nature activities Androstenedione Testis and A^-Androstene- Weakly androgenic, adrenal cortex 3,17-dione protein anabolic Estradiol Ovary, testis, Estratriene-3,17- Estrogenic, protein adrenal cortex, diol anabolic in fe- placenta (?) males, thymolytic, growth-stimulat- ing Estriol Placenta 16-Hydroxy estra- diol Estrogenic Progesterone Ovary, adrenal A^-Pregnene-3,20- Progestational, ovu- cortex, pla- dione lation-inhibiting centa Relaxin Ovary Unknown Relaxes pubic liga- ments Adrenocorticotro- Anterior pitui- Polypeptide Stimulates adrenal phin tary cortex secretion Growth hormone Anterior pitui- Protein Protein anabolic. tary stimulates bone growth Follicle-stimulat- Anterior pitui- Glycoprotein Stimulates ovarian ing hormone tary follicle (FSH) Intermedin Anterior pitui- Polypeptide Disperses chromato- tary phore granules in skin Luteinizing hor- Anterior pitui- Protein Induces ovulation mone (LH) tary and gonadal hor- mone secretion Prolactin Anterior pitui- Protein Stimulates milk pro- tary duction and ma- ternal behavior Thyrotrophin Anterior pitui- Protein Stimulates thyroid (TSH) tary hormone produc- tion might well have been included, but the listing clearly indicates the chemical variety of hormones and their broad range of activities. The latter, however, are inadequately indicated, since only the chief activities are listed. There is, in fact, no 179 GREGORY PINCUS tissue in the mammalian body which is exempt from some sort of hormonal influence either in the course of its development or in its functional activities. Investigations of hormone physiology have quite properly been centered on the more specific actions of these substances, but it becomes more and more evident that the spheres of action are often extremely broad, and frequently far beyond the narrow limits suggested by the tissue of origin and its known interrelationships with other organs and tissues. Thus the expected action of ovarian estrogen as a promoter of female reproductive tract growth and of estrous behavior is ac- companied by multitudinous activities quite outside the repro- ductive realm; estrogens are also hair and bone growth reg- ulators, thymolytic, euphoria-inducing in the menopause, mitogenetic in the epidermis, enzyme inhibitory in the adrenal cortex, phagocyte-stimulating, alkalosis-inducing, antiathero- genic, tumorigenic, antigoitrogenic, antihyperglycemic, en- hancers of cortisone-induced weight loss and glycosuria, hypho- thalamic threshold lowering, anemia-inducing in dogs, etc., etc. Similar multiplicities of action may be cited for most hormones. Out of this welter of activities there arises the con- cept of an array of hormonal substances circulating to the various tissues of the body and interacting in a vast complex of functional processes. It is not necessary to labor the point that the hormones are chemically a heterogeneous lot and biologically ubiquitously active. The only thing that unites them is a definition of them as internal secretions. How then may one consider them as biochemical entities? I suggest that for any and every single hormone there are five fundamental questions to be answered: (7) What is its chemical structure? (2) How does it origi- nate? (3) What does it do? (4) How does it do it? (5) What is its fate? In the case of no single hormone do we have a complete answer to all these questions. An inspection of Table I indicates that the chemical structures of most hormonal sub- stances are either unknown or only partially defined. If we consider those with known chemical structure we find that even 180 HORMONES in the best instances the answers to questions (2), (3), (4), and (5) are either incomplete or lacking. Let us consider an out- standing example. Cortisol as a Hormone Prototype Cortisol is firmly established as an adrenocortical hormone. Because of its medical utility, Cortisol, and, interchangeably, its transformation product cortisone, have been during the past five years objects of extraordinarily intensive investigation. How does it originate? The best information available suggests that its biosynthesis as a specific adrenocortical product is ac- complished by at least two major biogenetic pathways (7,10). These are depicted in Figure 1. Adrenocortical enzyme sys- tems responsible for steps (I occurs readily (2). In all species examined thus far a considerable pro- portion of the transformation products of Cortisol are unknown. In recent studies with C^ ^-labeled Cortisol there have been in- dications that a variety of products may occur, some of which may be nonsteroidal. Furthermore, there are indications of species differences in the mode of metabolism ; thus in the rat and mouse there is considerable excretion of fecal metabolites, whereas in man up to 80% of the 4- G^ ^-Cortisol radioactivity has been excreted into the urine (5). In the case of the steroid hormones the search for metab- olites generally has paralleled what has been described for Cortisol. No complete balance sheet is possible but a variety of transformation products are well established. When we con- sider the hormones the chemical nature of which is less well es- tablished, our knowledge of their fate in the body is meager indeed. Thus it is known that certain anterior pituitary hor- mones disappear extremely rapidly from the blood stream, but where they go and what their chemical fate is, remains a mys- tery. Having discussed in summary fashion the major biochemi- cal problems of a fairly intensively investigated hormone, I think I have made evident some of the hiatuses in our knowledge concerning it. Similar considerations apply to other hormonal substances. What they do is known to a greater or lesser extent, but it may be safely stated that there is no complete knowledge of all the actions of any single hormone. How they do it is for the most part a mystery, at least in the ultimate sense of mechanism of action. And the biochemical fate of most of the hormones is unknown, and for those concerning which we have some specific information a complete balance sheet has not been established. Synergism and Antagonism There are other aspects of hormone biochemistry not en- compassed by our five leading questions. For example, sub- 188 HORMONES sidiary perhaps to the problem of mechanism of action are the problems of inhibition and synergism in hormone action. Ap- parently straightforward examples of hormone antagonism may be cited : the inhibition of androgens by estrogens, the antago- nism between pituitary growth hormone and AGTH in a num- ber of their effects, the anti-insulin effect of certain cortico- steroids, diuretic and antidiuretic hormones. Synergism is less easy to exemplify — estrogen and progestin seem to synergize in certain effects, not in others; and augmentation of androgen stimulation has been observed with thyroxin administration; a horse pituitary extract in itself inactive appears to sensitize the adrenal to ACTH action. When one examines these types of hormone interaction somewhat more closely, it becomes difficult to be certain that the same process is affected by the interacting hormones. Thus androgen and estrogen both stimulate pros- tate growth ; the former acts upon the secretory tissue, the latter on the utricle ; yet estrogen is employed in prostatic disease as an androgen antagonist. Estrogen sensitizes the uterus to pro- gestin action and is thus synergistic, but large estrogen doses may actually inhibit pseudopregnant proliferation due to proges- terone. The crux of the matter lies in the identification of the specific chemical processes labile to the various interacting hor- mones, and this, as we have said before, still eludes us. Hormone Therapy I have scarcely remarked on the therapeutic actions of the hormones, particularly their role in affecting various pathologi- cal processes. The earliest uses of hormones in therapy were for replacement in obvious cases of deficit. The wide usage of estrogen in the menopause is considered replacement therapy, as is insulin for the control of diabetes, thyroid in hypothyroid- ism, and corticosteroid in Addison's disease. With the advent of new and more potent preparations of various types and partic- ularly with the discovery of the antiphlogistic actions of ACTH and corticosteroids, experimental investigations of hormone ef- 189 GREGORY PINCUS fects in practically every known disease have multiplied. At the moment it is hard to see the forest for the trees, but a concept of "regulatory" therapy appears dimly. The most vocal protago- nist of such a concept has been Professor Hans Selye, whose various publications on "diseases of adaptation" suggest a dis- turbance of the normal pituitary-adrenal relationship as one etiologic factor in a great variety of diseases (14). It is impos- sible to summarize adequately the voluminous discussion and the shifts and changes which have marked this general theory. The endocrine basis has been a notion of imbalance between mineralo- corticoid and glycocorticoid hormones of the adrenal cortex which in turn involves imbalances in mineralocorticotrophic and glycocorticotrophic pituitary hormones. Thus far no mineralo- corticotrophin has been established as a distinct entity, al- though Selye believes that pituitary growth hormone serves that function. ACTH acts as the glycocorticotrophin. The theory demands that continued stress induces an alteration in adreno- cortical output of such a nature that mineralocorticoids tend under chronic stress to preponderate among the secretory products. Certain recent findings are worth mentioning. First of all, the discovery of aldosterone as an extremely potent adrenal mineralocorticoid (15) suggests that this substance may be the prophlogistic adrenal hormone. Secondly, the excretion of aldosterone-like sodium-retaining activity in human urine appears to be increased by growth hormone administration and unaffected by ACTH administration (17). Thirdly, chronic ACTH administration, the presumed equivalent of chronic stress, significantly alters the nature of adrenocortical secretion; in the rabbit, primarily a secretor of corticosterone, chronic ACTH treatment tends to increase Cortisol and decrease corti- costerone secretion (8). Since corticosterone is more of a mineralocorticoid than Cortisol (the typical glycocorticoid), ACTH, in the rabbit at least, tends to alter adrenocortical se- cretion toward prophlogistic hormone output. A detailed dem- onstration of the nature of aldosterone biogenesis and of the nature of adrenal secretion in chronic stress is clearly needed. 190 HORMONES Hormones and the Future In describing certain aspects of the present biochemical status of the hormones I think I have indicated by inference some of their future prospects. Gaps in our knowledge con- cerning them are most obvious, and these will one day be filled. Instead of examining specific deficiences and what their cor- rection will imply, it may be worth while to take a broad look ahead. Basic to this broad look is the expectation that one specific set of deficiencies must and will be corrected — our knowledge of the chemical nature of the hormones must be advanced so that either the chemical structure of known hormones will be es- tablished, or that, in the case of complex substances, chemically pure preparations will be available. Much of the controversy and confusion in hormone research may be traced to the prop- erties of impure hormone-concentrating extracts. Thus the paradoxical hyperglycemic action of insulin has been established as due to the presence of glucagon in insulin concentrates. Much controversy concerning the salt-retaining activities of adrenal extract appears to be resolved by the isolation and identification of aldosterone. A number of mysteries in thyroid hormone biochemistry have been solved with the establishment of triiodothyronine as an active principle. Many more such instances could be cited. The chemical nature of the hormones listed as unknown in Table I should be known, and among those known many should be better known. Essential also to a broad look is a realization of the per- vasiveness of the hormones in body economy. If we consider the known products of the glands of internal secretion and their known active metabolites, it may be calculated that over 50 biologically active substances circulate continuously in the blood of mammals as hormones. There is no vital process which is exempt from their influence, and yet, with few exceptions, these substances are not essential for life. In the rat, for example, neither thyroidectomy, nor gonadectomy, nor hypophysectomy, 191 GREGORY PINCUS nor adrenalectomy is fatal. What happens in these events is that the rates of certain processes are reduced to a minimum. When the need arises for a speeding up of these rates it cannot be fulfilled, for the sources of the prime accelerators are gone. The margins of safety afforded by hormone-paced homeostasis are reduced to a minimum. But we are indeed concerned with more than safety alone ; the physical and mental dullness of the hypothyroid individual, the asthenia of the Addisonian, repre- sent deficits in an optimal rate of living. One of the extraor- dinary features of adequate hormone balance is the mental and physical vigor of the organism, its adaptability, its drive. One of the questions to be asked therefore is whether op- timal rates of living are a function of a specific balance of hor- monal secretion. Must this large conflux of circulating effector substances contain precise quotas of each component? What is the long-run effect of even minor excesses and deficits? We have developed a tolerable understanding of the daily requirements for a good number of vitamins. Are there similar daily hor- mone requirements? Are there individual as well as average requirements? One obvious result of our assessment of vitamin requirements has been the administration of adequate amounts to aging individuals. Somewhat less certainly geiiatric hor- mone administration is practised. But even before the obvious deficiencies of age are apparent, may there not be subtler im- balances contributing to inadequacies and inefficiencies of general metabolism, of nervous function? In a recent study of steroid excretion in over 600 men and women of various ages (11), we were struck by the remarkable consistency of individual secretion patterns. Each individual has a characteristic quanti- tative output of certain steroids and therefore a characteristic ratio of one type to another type. This consistency of personal patterns has been demonstrated in fine chemical detail for the individual metabolites in the urinary ketosteroid array by Dob- riner and his colleagues (3). What is its significance? Broadly speaking there is an implication of set secretory activity by steroidogenic organs along with fixed modes of metabolism of 192 HORMONES the hormones by extraglandular tissue. How do these patterns become fixed? There is at present no vahd answer to this question. One reason why an answer evades us is our inabiHty to assess in even approximate quantitative fashion the degree of interdependence of the various hormonogenic systems of the body. From laboriously attained bits and pieces of evidence we have the beginnings of an understanding of such interdependencies. We know, for example, that adequate estrogen action requires adequate thyroid hormone, that the secretion of ACTH may be suppressed by various corticosteroids, that pituitary gonado- trophin release depends in the rat on an estrogen-progestin balance. Is there a key pacemaker to this system of checks and balances? Or are we dealing with a complex servel mech- anism? Are there endogenous antihormones which play a role in the complex hormone equilibrium? Certainly in any con- sideration of the effectiveness of hormone secretion it is important to evaluate those influences which tend to inactivate the hor- mones. For every known hormone there exists in vivo one or more inactivating mechanisms. These are enzymatic systems which oxidize, reduce, detoxify. What is their quantitative and qualitative contribution to the endogenous hormone pattern? What regulates their rate of functioning? We have recently ex- amined a blood-borne enzyme system that inactivates ACTH. Its concentration in the blood of certain individuals is negligible, whereas in the blood of others it is so high as to effect ex- tremely rapid loss of ACTH activity. What is the biochemical basis of this large individual difference? We have indicated that both the rate of secretion and the rate of destruction are key processes in the setting of hormone balance. One other functional phenomenon still scarcely ex- plored requires mention — the phenomenon of action of the end organ. One characteristic of the biological response of or- ganisms to hormones is variability. Certain individuals show very low response thresholds, others very high ones, and there is a characteristic distribution in between, exemplified by the 193 GREGORY PINCUS well-known dosage-response curve. In intact organisms this may be reflective of quantitative variations in hormone-in- activating systems; but one may observe this variability in response in isolated tissues or cells, e.g., in the glycogenolytic action of glucagon or epinephrine on liver cells in vitro, in the effects of insulin on glycogenesis of the isolated diaphragm. What is the basis of this variable effectiveness, which in certain instances may amount to nearly complete ineffectiveness? One may of course postulate hormone-inactivating mechanisms of varying efficiency present in the end organs themselves. An- other possibility inheres in the quantitative variations of sub- strates or cofactors of the hormone-labile systems. A third, and most intriguing, possibility is the existence in the end-organ tissue of native hormone analogues as inhibitors. I may cite as an example the recent demonstration by Velardo and his collaborators (16) of the pacemaking action of estriol. When estradiol, which is a much more potent uterus-stimulating es- trogen than estriol, is administered along with estriol, the degree of stimulation over a considerable dosage range is determined by the estriol, not by estradiol. It is as if estriol has an estradiol- displacing action at the effector sites. Is it possible that for many, most, or even all of the hormones endogenous antagonists are produced either as extraglandular metabolites of the active compounds or by the secretory tissues themselves? One of the most interesting phases of the adaptation syndrome is the so- called stage of adaptation. Effects characteristic of the initial stage of alarm cannot be duplicated at this time by identical stresses. May not the stage of adaptation be characterized by a shift to secretion of, for example, corticoid antagonistic sub- stances which saturate the sites of action at the end organs and render the corticoids ineffective. Thus far in attempting a broad look at the future of the hormones we have apparently been occupied in asking questions. But I feel that these questions are keys to the future. In the case of any individual hormone we must continue to ask our five leading questions. But this is not the limit of our inquiry. We 194 HORMONES Still have the larger questions of hormone interaction. There are complex balance sheets to be set up, monograms, and in- dividual accountings. We must account for pathological and personal variations in function and for declines in function at- tributed to "normal" aging. If this seems a gigantic task, I think its magnitude is exceeded by its fascination. In our discussion we have considered the hormones as regulators of a great variety of vital processes. I should like to emphasize that these processes may vary from intracellular chemical reactions to complex behavior. Androgens affect protein anabolism, but also the pecking order of cockerels. Cortisone inhibits protein synthesis, induces euphoria, and is, under certain circumstances, psychotogenic. Progesterone pre- vents water intoxication and induces broodiness in hens. We are concerned not only with intimate biochemical events but also with the organism as a whole. In their practical applica- tion, therefore, the hormones must be considered not only as the agents of specific biochemical effects but also as governors of behavior and perhaps even ideation. Hormonal treatment as now practised for premenstrual tension and menopausal vaso- motor symptoms is designed not only to enable women to func- tion better but to feel and behave better. Perhaps this is just another way of stating that hormones have considerable effects on the central nervous system. If, then, we visualize the hormones as continuing to con- tribute more and more to the metabolic efficiency of the or- ganism in health and disease, to its adaptability to stress, to its resistance to involution, to its emotional well-being, to its better prenatal and postnatal development and growth, have we come to the end of our prophecy? I suspect not. It may not be entirely pertinent to a biochemical essay, but I cannot forbear mentioning certain contributions to the livestock industry. Hormonal caponization has become a standard practise in poultry husbandry. I dare say that fairly simple hormone treatments will shortly be used to improve the quality of beef, pork, mutton. It is possible that control of the sex ratio in 195 GREGORY PINCUS animals by hormonal means may one day be attained. Cer- tainly hormone therapy in veterinary medicine will be increas- ingly practised. Then there is anthropology. The measure- ment of physical and emotional differences between the so-called races of men has disclosed differences that may have rather profound endocrine bases. What about endocrine mechanisms in the fat metabolism of the Eskimo, pituitary and androgen function in the Pigmy, adrenal function in ceremonial rites? Are there endocrine bases to personality and behavioral tribal characteristics? I have thus far limited this discourse to known animal hor- mones. I should like to remark finally and briefly on prospects of discovery. Mammalian endocrinology has been the most intensively exploited field, particularly because of medical im- plications. At this writing the probability of the discovery of many new mammalian hormones appears limited. I am not unmindful of the need for further exploration of pituitary factors (adipokinin may be established as the latest) and of gastro- intestinal tract hormones and of the parathyroid mystery and of prospects of new neurohumors. But I do believe that our knowledge of significant hormones in the lower vertebrates and invertebrates is at best elementary. A few faithful and ex- traodinarily able investigators have discovered fascinating hormonal mechanisms in insects and Crustacea, with the result that the problems that they have uncovered can keep many people busy for a long time. Comparative endocrinology as a science is not even an infant, it is a conceptus. If you would like to be the discoverer of a new animal hormone, apply your bio- chemistry to any one of innumerable species of nonmammalian forms. There lies the untouched treasure. I hope it is evident that the trajectory of the curve de- scribing hormone research has not yet reached its inflection point. Certainly evident to the scientific pioneer are the pros- pects of wide-open spaces, of intriguing new phenomena, and of mysterious natural events. There is no stage in individual de- velopment from conception to senility which is exempt from 196 HORMONES hormonal influence. There is even dying itself. Moreover, there is a diversity of problems which is unparalleled. In the study of any single hormone the resources of organic chemistry, of cellular and general physiology, of enzyme biochemistry, and even of neuropharmacology and psychology may be called into action. As biologically active substances the hormones have an often baffling ubiquity. For a long time they will continue to be inciters of curiosity and stimulants to investiga- tion. To judge by the scientific rewards which have been reaped, there are greater rewards to come. References 1. Burstein, S., and R. I. Dorfman, J. Biol. C/um., 213, 581 (1955). 2. Burstein, S., and R. I. Dorfman, personal communication. 3. Dobriner, K., J. Clin. Invest., 10, 950 (1953). 4. Dorfman, R. I., and F. Ungar, Metabolism of Steroid Hormones. Burgess, Minneapolis, 1953. 5. Gallagher, T. F., H. L. Bradlow, D. K. Fukushima, C. Beer, T. H. Kritchevsky, M. Stokem, M. L. Eidinoff, L. Hellman, and K. Dobriner, Recent Progr. Hormone Research, 9, 41 1 (1954). 6. Hechter, O., Ciba Foundation Colloquia on Endocrinol., 7, 272 (1953). 7. Hechter, O., and G. Pincus, Physiol. Revs., 34, 459 (1954). 8. Kass, E. H., O. Hechter, I. A. Macchi, and T. W. Mow, Proc. Soc. Exptl. Biol. Med., 85, 583 (1954). 9. Mechanism of Corticosteroid Action in Disease Processes, Annals A^. Y. Acad. Sci., 56, 623 (1954). 10. Pincus, G., in Paul Kallos, ed., Progress in Allergy. Little, Brown, Boston, 1955. 11. Pincus, G., L. P. Romanoff, and J. Cado, J. Gerontology, 9, 113 (1954). 12. Pincus, G., E. B. Romanoff, and L. P. Romanoff, Ciba Foundation Colloquia on Endocrinol, 7, 240 (1953). 13. Russell, J. A., and A. E. Wilhelmi, in F. D. W. Lukens, ed., Medical Uses of Cortisone, Vol. 1 . Blakiston, New York, 1 954. 14. Selye, H., The Story of the Adaptation Syndrome. Acta Montreal, 1952. 15. Simpson, S. A., J. E. Tait, A. Wettstein, R. Neher, J. von Euw, O. Schindler, and T. Reichstein, Helv. Chim. Acta, 37, 1 163 (1954). 16. Velardo, J. T., F. C. Hisaw, and C. M. Goolsby, Federation Proc, 12, 68 (1953). 17. Venning, E. H., Ciba Foundation Colloquia on Endocrinol., 8, 190 (1955). 197 PROBLEMS OF CELLULAR BIOCHEMISTRY CARL F. CORI, Department of Biological Chemistry, Washington University School of Medicine, St. Louis, Missouri If the present era of biochemistry needs a general charac- terization, it might be said that the central problems are those concerned with enzyme action. The reason for this is based on the recognition, in the last fifty years, that most of the chemical reactions which occur in living organisms are enzyme-catalyzed and that synthesis and degradation of organic molecules gen- erally involve a series of enzymes acting in sequence. From this would follow the present trend of obtaining as much relevant information as possible about each enzymatic reaction a par- ticular organism or tissue is capable of carrying out. When one considers the whole array of living forms and the great diversity of organic molecules which occur in nature, it seems clear that work along these lines will progress actively for a long time to come, subject only to the limitation of available methods. The level of significance, the depth to which one can penetrate into a problem, is severely limited by methods. It can be clearly seen how recent methodological advances have led to solutions of problems which were previously unattainable. Among others, the use of isotopes, of chromatography, and of precision instruments for physical measurements come to mind. 198 CELLULAR BIOCHEMISTRY The proposition that most biological problems, if one probes deeply enough, can be reduced to enzyme problems, would seem to justify a certain amount of optimism about the possible attainments of the future. Each scientific era sets up its own criteria of what is regarded as significant. We would regard as deeply significant even the partial solution of such problems as that of nucleic acid and protein synthesis, which are in turn con- nected widi the much larger problem of self-duplication of genetic material and its somatic expression through tlie control of the formation of specific enzymes. The example just given indicates the degree to which the boundaries between various disciplines, once sharply delineated, have been blurred. The widening territory in which it is pos- sible to operate with biochemical methods enhances the feeling of the unity of science and facilitates cross-fertilization between diflfercnt disciplines; it also has the effect of counteracting the much decried tendency to overspecialization. Remarkable as the advances are in the elucidation of cellular structure through the use of the electron microscope, biochemists would not have paid much attention if there had not been present an awareness of the importance of structural elements for biochemical events in intact cells. Here one needs refer only to investigations on the role of mitochondria for the energy metabolism of the cell. The study of the biochemical potentialities of these and other cellular particles is important in relation to the activity of the cell as a whole. Cellular Organization The rapidly increasing information about enzymatic re- actions is accompanied by attempts to apply this knowledge to the intact cell, the ultimate goal being an understanding of the processes which determine the integration of enzymatic ac- tivities at the cellular or even organismic level of organization. Biochemistry is moving but slowly in this direction, because there are many difficulties, but there can be no doubt that such 199 CARL F. CORI understanding will have far-reaching consequences for biology as a whole and that it will be of great benefit in the treatment of disease. In a sense the problem has been worked on extensively in the past on a variety of unicellular organisms. There is also available a large amount of information which is based on work on the intact animal, with a variety of methods, including more recently the use of isotopes. The study of regulatory mech- anisms and the endocrine control of metabolism fall into this category. In this article an attempt will be made to outline some of the problems which arise in this field, and to point out certain areas where additional information is needed. It is not in- tended to cope with a vast, quite heterogeneous, and widely scattered literature or to treat any given problem exhaustively. The field will be narrowed down further by considering mainly mammalian cells. Rate of Penetration of Sugars into Cells One of the first questions which arises is that of rate of penetration of various substances through the cell membrane. For example, is it the rate of entrance of metabolites, more or less common to all cells, such as sugars, amino acids, fatty acids and their keto derivatives, which determines the rate of metab- olism within the cell, or are the rate-limiting steps the enzy- matic reactions in which these metabolites are used as sub- strates? In the first case the cell membrane would have a con- trolling influence over the rate of metabolism ; in the second case the effective enzyme concentration would be decisive. In spite of a very large literature on the subject of permeability, information on this question is very scanty. Work carried out recently in this laboratory by Drs. Field, Heimberg, and Crane and not as yet reported has given a defi- nite answer to this question for the Ehrlich ascites tumor cells metabolizing various sugars. These washed, single-cell prep- arations show one of the highest rates of glucose catabolism 200 CELLULAR BIOCHEMISTRY known for mammalian cells (anaerobic lactic acid production equivalent to 25 per cent of dry weight of cells per hour at 37° G.) ; their rate of lactic acid production remains linear for many hours under anaerobic conditions, and there is little if any lag period when glucose is introduced at zero time, and ini- tial acid production is measured titrimetrically with a glass elec- trode assembly. The final distribution of various sugars (some of which were utilizable and some of which were not), based on the aqueous phase of medium and cells, was close to unity, and equilibrium was reached within one minute at 37 ° G. over a wide range of sugar concentrations. Only by lowering the temperature to 20 ° G. could the actual rate of penetration be measured, which was found to be rapid enough, even at that temperature, to sustain the observed rate of lactic acid formation at 37 ° C. Furthermore, rates of lactic acid formation, deter- mined at different concentrations of glucose, gave typical Line- weaver-Burk plots and K^ values which were of the same order as iT^ determined on hexokinase extracted from the cells (A'^ was close to 1 X \0~^ M per liter in both cases). These and other observations make it quite certain that the rate of sugar metab- olism of these cells is determined by the rate of activity of the intracellular enzymes and not by the rate of penetration of the sugars through the cell membrane. It is possible to decrease the rate of lactic acid formation in these cells by means of sugars which, while not being phos- phorylated, have sufficient affinity for a common transport sys- tem to act as competitive inhibitors. Thus galactose and 3- methyl glucose inhibit the rate of lactic acid formation from glu- cose, fructose, and mannose, and the degree of inhibition, at different concentrations, is determined by the relative affinities of these sugars for the transport system. The question of the rate of penetration of sugars into the tissues of the intact animal is not so easily analyzed. In a study carried out some twenty years ago on rats it was noted that the ratio, fermentable tissue sugar/plasma sugar, was lowest for skeletal muscle, intermediate for diaphragm, and highest for 201 CARL F. CORI heart muscle. Following glucose injection, heart muscle proved to be much more permeable than skeletal muscle. This was attributed to the difference in the number of open capil- laries in the active cardiac muscle as compared to resting skeletal muscle. In heart, after glucose injection, the ratios, tissue sugar/plasma sugar, ranged from 0.4 to 0.6. Had the sugar been present only in the extracellular fluid space, the ratio would have been about 0.2. Part of the sugar was there- fore intracellular, and the increase in the intracellular concen- tration with rising plasma concentration indicated that the rate of penetration was greater than the rate of utilization. When skeletal muscle was stimulated, thereby imitating heart muscle, an intracellular distribution of sugar could be demonstrated (6). Following the intravenous injection of a nonutilizable sugar into a nephrectomized animal, to take relatively simple ex- perimental conditions, the following factors come into play in the distribution of the sugar in the body: (7) rate of penetration through capillary wall; (2) rate of distribution in the extra- cellular fluid space ; (3) rate of penetration into different tissue cells ; and (4) selectivity of various cell membranes. In general, (7) is a very rapid process, to judge from the initial rate of dis- appearance of the sugar from the blood. The rate of (2) and hence of (3) will depend on the cross section of open capillaries, on blood pressure, and on rate of blood flow; for this reason different tissues will attain a state of equilibrium at different rates. In regard to (4), definite information is available with re- spect to erythrocytes, small intestine, kidney tubules, and peritoneal cavity. The latter shows no selectivity with respect to the rate of absorption of various hexoses and pentoses, whereas intestine and kidney are highly selective. The capillaries of the choroid plexus (representing the so-called blood-brain barrier) are also selective, whereas the glomerular capillaries allow the passage even of substances of relatively large molecular weight, such as inulin. Whether the mechanism of uptake of sugars by tissue cells 202 CELLULAR BIOCHEMISTRY is similar to that in intestine and kidney is an open question. In intestine the more rapid absorption of galactose and glucose as compared with pentoses is attributed to an "active" process, specifically phosphorylation of the hexoses, whereas the absorp- tion of the pentoses is attributed to a simple process of dif- fusion. This phosphorylation (and by implication) -dephos- phorylation mechanism is also supposed to operate in the prox- imal convoluted tubules of the kidney. Without attempting to examine the evidence for this hypothesis in detail, certain diffi- culties may be pointed out at this time. Carefully controlled experiments carried out by Sols (18) with extracts of rat intes- tinal mucosa have failed to show the presence of enzymes capable of phosphorylation of galactose and 3-methyl glucose (contrary to statements found in the literature). Yet these two sugars are absorbed as rapidly as glucose. A hexokinase capable of phosphorylating glucose, fructose, and mannose and having a specificity similar to that of brain hexokinase was always found in these extracts. On the dephosphorylation side there is the diflSculty that glucose-6-phosphatase is missing in the kidney of children with severe glycogen storage disease of liver and kidney, but these children do not have glycosuria (5). Keston (14) has recently described the occurrence of a mutarotase in kidney, an enzyme which has previously been found in molds and which is specific for certain sugars. On the assumption that a form of low abundance, presumably an open- chain form of sugar, penetrates preferentially into cells, a role is ascribed to this enzyme in sugar transport in all tissues. Muta- rotase, according to this theory, would control an important rate-limiting step in carbohydrate metabolism, the rate at which sugar enters the cell, and would also be implicated in diabetes and the action of insulin. Levine's (16) theory of insulin action is also based on the assumption that the rate of glucose utilization in tissues is controlled by the rate of sugar transport across the cell membrane. An alternative hypothesis is that the rate of glucose metabolism is controlled by intracel- lular enzymes. Important as a decision between these two 203 CARL F. CORI alternatives may be, rigorous proof for either concept has not been obtained so far. Compartments of the Cell The control of rates of metabolism by intracellular enzymes may be illustrated in the following examples. When isolated frog muscle is compared at rest and during tetanic contraction, a more than 1 00-fold difference in the rate of lactic acid forma- tion can be demonstrated. The mechanism underlying this increase in enzymatic rates has not been explained. Recent work (9) indicates that at 0° C, even if there is no demon- strable splitting of ATP or phosphocreatine during contraction, there occurs nevertheless an increase in the concentration of inorganic phosphate which may arise from an unknown precur- sor. The concentration of inorganic phosphate in resting muscle is high enough to saturate phosphorylase, the first enzyme in the chain of reactions from glycogen to lactic acid. If the reaction catalyzed by this enzyme were the rate-limiting step in glycolysis in resting muscle, and if it were then accelerated 1 00-fold by the formation of inorganic phosphate during contraction, one would have to make the additional assumption that at rest the enzyme is almost completely separated from inorganic phosphate. A determination of intermediates of glycolysis in resting muscle shows that hexosemonophosphate is present in a concentration which would saturate phosphofructokinase. During contrac- tion hexosemonophosphate increases (8), and in order to make phosphofructokinase the rate-limiting step, the same additional assumption would have to be made as in the case of phosphory- lase — a compartment of the muscle cell which does not permit contact between the enzyme and its substrate — a barrier which is broken down during contraction and is re-established during rest. Because of the possible existence of such barriers, it may be misleading to draw conclusions from steady-state concentra- tions of intermediates. For example, exposure of isolated frog muscle to epinephrine causes an approximate doubling of the 204 CELLULAR BIOCHEMISTRY hexosemonophosphate concentration, but this is associated with a minimal increase in the rate of lactic acid formation (11). Instead of envisaging a "barrier," one could also assume that certain muscle enzymes exist as inactive precursors in resting muscle and are changed to active forms during contraction. In fact, epinephrine has such an effect on muscle phosphorylase, which consists in the conversion of an inactive to an active form (see below). For want of a better one, the term "compartment" will be used to describe these deviations from the usual kinetics of enzymes as obtained in cell-free systems, and it will be under- stood that explanations for this phenomenon are highly specu- lative. Compartments can also be invoked to explain glycogen formation in the liver. The equilibria of the enzymes involved are such that if the steady-state concentration of inorganic phosphate in contact with phosphorylase were 1 fxM. per gram liver, the steady-state concentration of glucose-6-phosphate would have to be about 7 fxWL for glycogen synthesis to occur. This is a much higher concentration than is found in the liver. Even if one assumes that inorganic phosphate is not in contact with phosphorylase so that the concentration of glucose-6-phos- phate could be lower, one is still faced with the problem of how glucose-6-phosphate formed by hexokinase escapes the action of glucose-6-phosphatase. On the other hand, when glycogen is being broken down, the glucose-6-phosphate formed is accessible to the phosphatase. It is as if glycogen synthesis and degrada- tion were completely separated in the liver cell, in spite of the fact that there is a common intermediate step, catalyzed by phospho- glucomutase. We are at present completely in the dark as to how such cellular operations are accomplished. The examples could be multiplied, since many other intermediates are known which can enter different metabolic pathways. To judge from work carried out with isolated mitochon- dria the complexity is very great even on the subcellular level. Factors of permeability are encountered owing to the presence of a membrane and of internal subdivisions as revealed by electron 205 CARL F. CORI microscopy. Several enzymes have been shown to be latent in mitochondria ; this implies either that the enzymes were present in an inactive form or, if active, that they were not in contact with their substrates. Furthermore, the metabolic activity of the mitochondria must be integrated with that of the cell as a whole. The relationship is such that metabolites, e.g., pyruvic acid, prepared by other enzyme systems must be supplied to the mitochondria as oxidizable substrates, while the cell must in turn be supplied with ATP which is being regenerated in the mitochondria. The functioning of the cell depends to a large extent on this interrelationship. The complexity of the system consists not only in the large number of diverse chemical operations which are carried on simultaneously in the same cell but also in the control of the speed of these operations. One might speculate that the neces- sary catalysts for a particular operation are associated into a unit within the cell. For example, hexokinase, phosphogluco- mutase, and phosphorylase in loose combination, perhaps in a separate compartment in the cell, would be a unit for glycogen synthesis, while other molecules of phosphorylase and phospho- glucomutase in combination with glucose-6-phosphatase would form a unit for glycogen degradation in the liver. Glucose-6- phosphatase, according to DeDuve et al. (7), is bound to the microsomes. Although phosphorylase and phosphoglucomu- tase appear to be present in a soluble form in a liver homogenate, this does not exclude loose combinations which would be broken up by present methods used for the disintegration of cells. Crane and Sols (4) have shown that over 90 per cent of the hexokinase in a brain homogenate is bound to particles which sediment at relatively low centrifugal speeds and which resemble mitochondria, whereas homogenates of other tissues contain a considerable part of hexokinase in soluble form. No information is available at the present time as to whether these findings have any physiological meaning. It would seem that new methods will be needed to explore this territory. 206 CELLULAR BIOCHEMISTRY Complexities of Organization Even if it is granted that the different chemical operations of the cell are carried out as if they were spatially separated, one has dealt with only a small part of the complexity of the system. The inherent capacity of the cell to duplicate itself and to exert a seemingly purposeful control over its function has made it difficult to assert that the ordinary laws of physics and chem- istry apply — a difficulty which the microcosm shares with the macrocosm. One may take as an example the following dilemma. The accretion of material of exactly the same molec- ular structure prior to division of the chromosomes and the control exerted by this structure on the formation of specific enzymes starts an unending causal chain, where one enzyme is necessary for the formation of another enzyme and so on. In order to break this chain, it is necessary to introduce a non- enzymatic step, either in the process of self-duplication of genetic material or in the formation of the first enzyme of a chain. When faced with such complexities, it is not surprising that some biologists prefer to invoke the operation of special vital forces which they believe are peculiar to living matter. This point of view also finds its expression in statements to the effect that enzymes studied in vitro after extraction from the cells are not the same entities which act in the intact cell. Granted that this may be true in certain cases, one would rather investi- gate the reason for such deviations than be discouraged about the validity of the methods that enzyme chemists have used. The higher forms of organization in multicellular organ- isms are characterized by the increasing complexity of regulatory mechanisms on the evolutionary scale. One finds specialization of chemical operations according to cell types assembled in organs, increasing control through the central nervous system, im- proved transport of materials to and from the cells through the development of the circulatory system, and finally the elabora- tion of highly active and specific substances, the hormones, which exert a control over enzymatic processes. A remarkably constant internal environment has been achieved through the 207 CARL F. CORI development of regulatory systems and the organism has gained in performance, but at the same time the different parts of the organism have become highly interdependent. Hormone Effects As a general outline, the following factors are known which enter into a regulatory system such as that of the blood sugar level: (7) specialized tissues which respond to changes in the blood sugar concentrations, e.g., the sympathetic centers in the hypothalamic region and the islet tissue of the pancreas; (2) effectors, which are partly nervous, partly humoral; and {3) targets, which are the enzymatic reactions specifically influenced by the effectors. It is on the last point that a few additional comments may be made. Although phosphorylase has been implicated in the metabolic action of epinephrine, hexokinase in that of insulin, and oxidative phosphorylation in that of thyroxin, none of these systems is as yet sufficiently well under- stood to make one confident that the results obtained so far ex- plain the actions of these hormones in the intact animal. Epinephrine and Glucagon The characteristic metabolic action of epinephrine in the intact animal consists in a rapid breakdown of glycogen in liver and muscle, even when at the time of injection the reaction is proceeding in the opposite direction. Thus, epinephrine not only causes increased phosphorylase activity but also has an effect on the direction in which phosphorylase activity is pro- ceeding. Phosphorylase occurs in liver and muscle in an active and inactive form, and there are enzymes present which can convert one form into the other with great rapidity. The active form in muscle, phosphorylase a, is a dimer of the inactive form, phos- phorylase b (13). Although phosphorylase b can be activated 208 CELLULAR BIOCHEMISTRY by adenylic acid, the concentration needed (1 X 10"^ M) is higher than that found in muscle. Epinephrine, when added to liver slices or to diaphragm muscle incubated aerobically in phosphate-Ringer's solution, causes a rapid increase in the con- centration of active phosphorylase and at the same time the glucose output of the liver slices and the lactic acid production by the diaphragm are increased (19), No effect of epinephrine has so far been described in a cell-free system. In order to measure the relative amounts of the two forms of phosphorylase in resting muscle, special precautions are necessary. The tech- nique recently used involved freezing the gastrocnemius muscle in situ in amytalized rats. The muscle was rapidly homogenized in the cold in a Waring Blendor in a solution containing 0.001 M versene and 0.02 M fluoride, which inhibits the intercon- version enzymes but has no effect on phosphorylase activity. Under these conditions rat muscle was found to contain 30 to 50 per cent phosphorylase a, the remainder being phosphory- lase b.* Following the subcutaneous or intravenous injection of epinephrine the phosphorylase a content of muscle rose to nearly 100 per cent within a few minutes, whereas the total phosphorylase content remained unchanged. In isolated rat diaphragm Sutherland (19) observed an increase in phos- phorylase a content within 4 minutes after the addition of epi- nephrine. Unexplained is the mechanism of the reversal of phos- phorylase action. This occurs in an isolated rat diaphragm which is actively synthesizing glycogen from the glucose in the medium. As soon as epinephrine is added, glycogen break- down exceeds glycogen synthesis so that there is either no gain or an actual loss of glycogen (20). The hexosemonophosphate * Similar values were obtained when muscle not frozen in situ was homog- enized within a few seconds after excision from the animal. When fluoride was omitted from the solution used for homogenization, almost all of the phosphorylase was present in the inactive or b form. An amount of homogenate corresponding to 4 to 5 mg. of muscle was used in the phosphorylase tests. The activity in a test without adenylic acid, expressed as per cent of the activity with adenylic acid, corresponds to the per cent of phosphorylase a. 209 CARL F. CORI content of muscle is increased by epinephrine, which should favor glycogen synthesis rather than breakdown. No indication has been found for an increase in inorganic phosphate which would favor breakdown. One could refer here again to the compartments of the cell, but this is not a satisfactory explana- tion since it is not amenable, at the present time, to experimental investigation. Glucagon, a protein recently isolated from the pancreas in crystalline form, increases the phosphorylase activity of the liver in the same way as epinephrine (19). In contrast to epi- nephrine, glucagon does not cause an increase in blood lactic acid in the intact animal, and it also has no action on the phosphory- lase a content of the isolated diaphragm. It is possible that glucagon cannot penetrate into the muscle cell. What the com- mon denominator, if any, might be between epinephrine and glucagon in their action on the liver is unknown; possibly glucagon causes the liberation of a sympathomimetic amine in the liver. In conclusion it might be pointed out that epi- nephrine and glucagon probably act on the enzymes which main- tain a balance between active and inactive phosphorylase rather than on phosphorylase itself, but this awaits verification in a cell-free enzyme system. Muscular activity also influences the relative amounts of active and inactive phosphorylase in muscle. Continuously active muscles, such as heart and diaphragm, contain a higher percentage of phosphorylase a than resting skeletal muscle. Stimulation of isolated frog gastrocnemius at a rate of 60 single shocks per minute for 1 to 2 minutes, i.e., conditions which per- mit work at a steady state without development of fatigue, resulted in a marked increase in the percentage of phosphorylase a. On the other hand, repeated tetanic stimulation during 1 to 2 minutes until the muscle showed fatigue, resulted in an almost complete disappearance of phosphorylase a. These ex- periments, which have not as yet been reported, illustrate again the dynamic balance which exists in muscle between inactive and active phosphorylase. 210 CELLULAR BIOCHEMISTRY Insulin Less definite statements can be made about the mechanism of insulin action than about that of epinephrine. There is in- direct evidence, obtained by a variety of methods on isolated tissues and on intact animals, that the first step in glucose utili- zation is accelerated by insulin. The same step presumably is inhibited by a substance of pituitary origin which is present in the serum of diabetic animals, which disappears after hypoph- ysectomy and reappears again when the diabetic hypoph- ysectomized rats are injected with growth hormone plus cortisone (3). The diabetic serum was tested on isolated rat diaphragm and the inhibition of glucose uptake could be counteracted by the addition of insulin. A lipoprotein fraction prepared from diabetic plasma and from anterior pituitary pro- duced a strong inhibition of the hexokinase reaction in a cell- free system, but the reversal of this inhibition by insulin was incomplete and did not have the desired degree of reproduci- bility (15). In isolated rat diaphragm the inhibition of glucose uptake produced by a lipoprotein fraction from serum of dia- betic rats was completely reversed by insulin. It should be pointed out that the effect of injection of these lipoprotein frac- tions in intact animals has not so far been reported. The severe disturbance in fat metabolism in the liver of the diabetic animal is now regarded as secondary to the inhibited glucose utilization (10). In the reversible series of reactions represented by acetyl CoA^fatty acid, there are two reductive steps in the direction to the right, for each C2 fragment which is added in the lengthening of the fatty acid chain (17). These reductive steps require DPNH which can be supplied by gly- colysis. Whether the DPNH formed during the operations of the Krebs cycle is available for fatty acid synthesis is uncertain. In the absence of sufficient glucose utilization in a liver depleted of its glycogen reserves, the steady-state concentration of DPNH diminishes, and this shifts the equilibrium to the left, i.e., fatty acids are now broken down and ketosis results (12). It should be mentioned that the liver in ketosis responds very sluggishly 211 CARL F. CORI to insulin, since it takes some time until secondary changes are repaired. That the normal liver responds rapidly to insulin, as do other tissues, follows from observations made on normal and diabetic subjects with the hepatic vein catheterization technique (2). On injection of insulin the hepatic output of glucose dimin- ishes within a short time. Another secondary disturbance is an increased glucose-6-phosphatase activity in the liver, which re- sults in increased dephosphorylations (1). This nullifies to some extent the beneficial effect of fructose in diabetes. This sugar is phosphorylated to fructose- 1 -phosphate by a separate enzyme and so is able to bypass the metabolic block at the glucose level, but in its metabolic transformations fructose- 1 -phosphate is in equilibrium with glucose-6-phosphate, and thus is converted to glucose by the increased activity of the phosphatases. There are some cells which are not influenced by insulin. The ascites tumor cells which were discussed earlier have been tested under a great variety of conditions, but a clear-cut effect of insulin on the rate of sugar uptake could not be shown. The conditions which make a cell respond to insulin are therefore not clearly defined. In general, an enzymatic step, such as that mediated by phosphorylase or hexokinase, which is at the be- ginning of a series of consecutive reactions, cannot, by being speeded up, increase the rate of the over-all reaction unless it is the rate-limiting step. It has been shown by several methods that phosphorylase is the rate-limiting step for glucose formation in the liver (19). The first step may be rate-limiting under the following conditions which, if changed, will permit an increase in the over-all rate. (7) Part of the enzyme is present in an inactive form. This is the condition under which epinephrine is able to exert its eflfect, by converting an inactive form of phos- phorylase to an active form. (2) The substrate concentration is below that which saturates the enzyme. (3) Product inhibition occurs because a subsequent enzymatic step in a reversible chain of reactions is relatively slow. (4) The enzyme is not fully active because it is combined with an inhibitor. Conditions (2) and {4) have each been suggested as the condition under which 212 CELLULAR BIOCHEMISTRY insulin is able to exert its effect, i.e., by increasing permeability of the cell membrane for glucose or by displacing an inhibitor. Animal hexokinase, in contrast to that of yeast, is noncompeti- tively inhibited by glucose-6-phosphate, and competitively inhibited (with respect to ATP) by ADP (4). If (3) were the necessary condition, insulin would accelerate an enzymatic step other than the first, or in some other way counteract the product inhibition. Thyroxin The effect of thyroxin and triiodothyronine in uncoupling aerobic phosphorylation in isolated mitochondria is obtained not only with dinitrophenol but also with a number of other unre- lated substances, none of which can replace thyroxin in thyroid deficiency. It may be difficult to show that this is the primary effect in the intact animal. The greatly increased oxygen con- sumption in the hyperthyroid animal may well more than com- pensate for the decreased efficiency of aerobic phosphorylation and could be the primary effect. This discussion about the action of epinephrine, insulin, and thyroxin makes it clear how difficult a problem it is to unravel the mechanism of their actions, not to speak of a number of other hormones the study of which has just begun. The task is made somewhat easier if one adopts the point of view that hormones are specific in their action, that they influence only one kind of reaction, and that the apparent multiplicity of their effects is secondary to a primary effect. The metabolic hormones which have been most extensively studied from a biochemical point of view have more or less conformed to this pattern. References 1. Ashomore, I., A. B. Hastings, and F. B. Nesbitt, Proc. Natl. Acad. Sci. U.S., 40, 673 (1954). 2. Beam, A. B., B. H. Billing, and S. Sherlock, Cib a Foundation Colloquia on Endocrinol., VI, 250 (1953). 213 CARL F. CORI 3. Bornstein, J., and G. R. Park, J. Biol. Chem., 205, 503 (1953); Bornstein, J., J. Biol. Chem., 205, 513 (1953). 4. Crane, R. K., and A. Sols, J. Biol. Chem., 203, 273 (1953) ; ibid., 206, 925 (1954). 5. Cori, G. T., Harvey Lectures, Ser. 48, 145 (1952-53). 6. Gori, G. T., J. O. Gloss, and G. F. Gori, J. Biol. Chem., 103, 13 (1933). 7. DeDuve, G., J. Berthet, H. G. Hers, and L. Dupret, Bull. soc. chim. biol., 37, 1242 (1949). 8. Fischer, R. E., and G. T. Gori, Am. J. Physiol., 772, 5 (1935). 9. Fleckenstein, A., J. Janke, R. E. Davies, and H. A. Krebs, Nature, 774, 1081 (1954). 10. Gurin, S., in V. A. Najjar, ed., Fat Metabolism. Johns Hopkins Press, Baltimore, 1954. 11. Hegnauer, A. H., and G. T. Gori, J. Biol. Chem., 705, 691 (1934). 12. Helmreich, E., H. Holzer, W. Lamprecht, and S. Goldschmidt, Z. physiol. Chem., 297, 113 (1954). 13. Keller, P. J., and G. T. Gori, Biochim. et Biophys. Acta, 72, 235 (1953). 14. Keston, A. S., Science, 720, 355 (1954). 15. Krahl, M. E., and J. Bornstein, Nature, 773, 949 (1954). 16. Levine, R., and M. S. Goldstein, Brookhaven Symposia in Biology, 5, 73 (1952). 17. Lynen, F., Federation Proc, 72, 683 (1953); Mahler, H. R., Federation Proc, 72, 694 (1953). 18. Sols, A., Third International Congress of Biochemistry, Summaries of Communica- tions, p. 53, Brussels, 1955; Biochim. et Biophys. Acta, 79, 144 (1956). 19. Sutherland, E. W., and C. F. Gori, J. Biol. Chem., 788, 531 (1951); Sutherland, E. W., Phosphorus Metabolism, 7, 53 (1951). 20. Walaas, O., and E. Walaas, J. Biol. Chem., 787, 769 (1950). 214 ENZYMES AS REAGENTS EFRAIM RACKER, Division of Nutrition and Physiology, The Public Health Research Institute of the City of New York, Inc., New York end to which our currents tend Inevitable sea To which we flow, what do we know What shall we guess of thee? Arthur Hugh Clough During the past ten years our concept of enzymes has undergone a noteworthy change. Enzymes are no longer the mysterious catalysts of a decade ago. They have become the mysterious reactants of today. Fifty years ago, kinetic experi- ments were performed which suggested the formation of enzyme- substrate intermediates during catalysis, but only in recent years has a direct demonstration of their existence been achieved. Now, an extensive search for these enzyme-substrate compounds is under way in various laboratories. The enzymologist of yesterday who isolated a crystalline enzyme and recorded a few of its properties considered his work a task well done. The enzymologist of today lacks this satisfaction. He realizes that with the isolation of the enzyme his task has just begun, and, depending on his own background and direction of interest, he will approach the purified enzyme as a protein of unknown chemical structure, or as a catalyst with specific kinetic proper- ties, or as a reactant which combines with the substrate. As a protein chemist, he will determine the amino acid composition; he will attempt a study of the amino acid sequence; he will modify the protein and search for a relationship between its 215 EFRAIM RACKER Structure and biological activity. As "kineticist," he will study the process of substrate activation; he will explore the con- ditions governing the efficiency of catalytic performance; and he will derive equations compatible with his data which might give him clues to the mechanism of enzyme action. As a progressive enzyme "reactionist," he will use the enzyme as a stoichiometric reactant ; he will explore the active center of the enzyme and the points of enzyme-substrate interaction. Some of these investigations require rather large quantities of highly purified enzymes, and it is not surprising that those enzymes which are readily available in large amounts have been studied most extensively. For example, crystalline glyceralde- hyde-3-phosphate dehydrogenase (TDH) can be prepared in gram quantities either from rabbit muscle or from yeast in the course of a few days. During the past years it has become the subject of study in numerous laboratories all over the world. Since these studies have been conducted with a relatively pure protein, and because of the multifunctional activities of TDH, this enzyme will be frequently cited as an example in the following pages. Enzymes as Proteins The biosynthesis of proteins, their molecular structure, and the relationship of structure to biological activity are among the unsolved and most challenging problems in biochemistry. Enzymes are particularly suited for such studies because their biological activity can be rapidly and accurately determined by very sensitive methods. The specificity of these methods permits the detection of a particular enzyme in a mass of other proteins. It was possible in this way to detect the formation of new enzyme proteins in cell-free systems, although little increment in total protein nitrogen had occurred (10). Studies on the composition and sequence of amino acids of various enzymes having the same action but obtained from different sources may represent the beginning of a new kind of comparative biochemistry. A remarkable similarity in amino 216 ENZYMES AS REAGENTS acid composition, molecular weight, DPN binding, turnover number, and other catalytic properties is exhibited by prepa- rations of glyceraldehyde-3-phosphate dehydrogenase from yeast and from rabbit muscle (50). An unidentified crystalline protein from papaya latex was "diagnosed" as lysozyme because of a resemblance in amino acid composition to the egg white enzyme (42). It is difficult to conceive that these similarities are coincidental. Although some differences in the biological and chemical properties of these related proteins exist, these seem minor compared to the great similarities, particularly in view of the fact that even enzyme preparations from a single source reveal microheterogeneity on rigid examination (6). For example, TDH from yeast was fractionated into proteins of different electrophoretic behavior with apparently identical biological activity (22). Such minor variations actually serve to make us more fully aware of the remarkable precision of the cellular machinery responsible for the production of these complex polymers. It seems quite logical therefore to assume that the specific assembly of amino acids takes place with tlie aid of a structural guide. There are, on the other hand, enzymes from different sources, for example, alcohol dehydrogenase from yeast and liver, which have vastly different properties although they catalyze the same reaction. It would be interesting to learn whether a discrepancy in catalytic efficiency (alcohol dehydrogenase from yeast is over 50 times as active as the liver enzyme) is mirrored in pronounced differences of amino acid composition or sequence. The relation between protein structure and biological activity of enzymes has been studied mainly by (7) chemical alterations of the protein; (2) partial proteolytic degradation of enzymes; (3) construction of enzyme models; and (4) investigations of the active centers of the enzymes. MODIFICATION OF PROTEINS BY CHEMICAL ALTERATIONS Essentiality or nonessentiality of certain groups for enzy- matic activity has been deduced from chemical alterations, such^ 217 ' ■ ^ ~f — Vv\ <5 I 2^ i ^- ! ?f. *^ .A 5^ Y EFRAIM RACKER as acetylations, oxidations, reductions. The workers in this field have been fully aware of the diffculties of this approach and have emphasized the importance of demonstrating the purity of the new protein derivative and, if possible, the reversibility of the induced modification. Extensive acetylation of pepsin (13) resulted in loss of enzyme activity which was fully restored after removal of the acetyl groups. Among other types of modifica- tions, two of more recent data may be quoted. Diisopropyl fluorophosphate (DFP) inhibits certain esterases as well as proteolytic enzymes with esterase activity, whereas other enzymes appear unaffected {cf. ref. lb). Cholinesterase and chymotrypsin are completely inactivated after reacting with one mole of inhibitor per mole of enzyme. From the inactive proteins, 0-phosphoryl serine was isolated after hydrolysis (40). Serine is therefore strongly implicated as part of the active site, provided steric hindrance, which will be discussed below, can be ruled out. Since an acyl shift from nitrogen to the hydroxyl group of serine may have occurred secondarily during the pre- parative procedure, the hydroxyl group may not be the primary reactor {cf. ref. 6a), It is significant that no phosphothreonine was found in the hydrolyzates. What determines the specificity of the interaction between DFP and enzyme-serine is unknown. Free serine or enzyme-threonine does not react with DFP. Perhaps sequence analysis of peptides containing the radioactive phosphate of DFP^^^ obtained after partial hydrolysis, may yield information on this point. The biological reactivity of hydroxy amino acids has been recently demonstrated by an entirely different approach. A rapid incorporation of labeled inorganic phosphate (P^^) was shown to take place into the phospho- protein fractions from which phosphorylated hydroxy amino acids were isolated (1,18). The susceptibility of TDH to iodoacetate (lAA) has been known for many years. Since it has been shown (23) that TDH contains firmly bound glutathione (GSH), which can be liberated by proteolytic enzymes, the interaction with lAA was reinvesti- gated (24). A very rapid reaction was found to take place 218 ENZYMES AS REAGENTS between lAA and enzyme-bound GSH, which was dependent on the presence of DPN. By comparison, the interaction between lAA and free GSH was quite slow. With three equivalents of lAA, enzymatic activity of TDH was completely blocked within a few minutes, and after proteolytic digestion of the modified protein, no unreacted glutathione was liberated. Furthermore, addition of acetyl phosphate to the enzyme led to the formation of acyl enzyme, from which a thiol ester was liberated by proteolytic digestion. Formation of acyl enzyme did not take place after treatment with lAA, but if acetyl phosphate was added prior to the inhibitor, the alkylation of the enzyme by lAA was delayed. These findings with lAA and similar experi- ments with A^-ethyl maleimide quite conclusively identified GSH as part of the active center of TDH, and ruled out the possibility that lAA inhibits enzymatic activity by steric hin- drance of enzyme-substrate interaction. In the case of inhibitors of enzymes which act on large molecular substrates, steric hindrance may, however, play an important role. Some of the immunological antienzymes probably act in this manner. The inhibition of trypsin by ovomucoid inhibitor is dependent on groups which are non- essential for proteolysis. This was shown by the fact that acetylated trypsin, which is enzymatically active, is not readily inhibited by ovomucoid inhibitor (9). It seems reasonable to assume that steric hindrance plays a major role in the inhibition of trypsin activity on proteins by ovomucoid, particularly since both inhibitor and substrate are rather large molecular sub- stances (2a). It is possible, on theoretical grounds, to differentiate three types of chemical modifications which may result in altered biological activity: (7) interaction with the active center; (2) interaction with sites in the vicinity* of the active center leading to steric hindrance (if the inhibitor is a large molecule, the site * In a coiled protein structure of the enzyme, a site in the vicinity of the active center may be far removed in terms of the amino acid sequence of the extended protein. 219 EFRAIM RACKER of interaction may actually be far removed) ; and (3) partial inhibition due to interaction with sites removed from the active center, "activating groups" in the sense of Langenbeck (27). The fact that only a limited number of specific blocking agents is available which can be used without leading to protein denaturation has seriously hindered progress in this area of in- vestigation. MODIFICATIONS OF PROTEINS BY PARTIAL DIGESTION The effect of partial proteolytic digestion on the activity of enzymes has not been extensively explored. It has been apparent for many years that, in some instances, biological activity of proteins may be retained after fragmentation, as was first demonstrated in the case of proteolytic digestion of diphtheria antitoxin (cf. 35). More recently (17), phosphorylase was cleaved into two inactive fragments and the lost activity was restored by addition of adenosine-5-phosphate. After exposure to proteolytic enzymes, TDH lost its activity, which was restored by adding SH compounds (23). ATPase activity of myosin was retained after proteolytic digestion (11). Ribonuclease, in- cubated with carboxypeptidase, contained over 70% of its original activity, although 20% of its nitrogen was split off. Further exposure to carboxypeptidase had no effect (29, cf. also la and 15a). The activation of proenzymes such as chymo- trypsinogen is another example of proteolytic modification which has yielded information about the active center. The splitting of a single peptide bond between arginine and isoleucine appears to suflfice for the activation of chymotrypsinogen (6b) . Of special interest is the demonstration of enzymatic activity in dialyzable fragments of autodigested pepsin (34). These small "enzymes" were found to contain only 3% of the specific proteolytic activity of native pepsin, but to retain 64% of its catalytic activity toward the synthetic substrate acetyl-L-phenylalanyldiiodo-L-tyrosine. Elucidation of the structure and amino acid sequence of the active fragments may yield significant information about the active 220 ENZYMES AS REAGENTS center as well as about the role of the activating groups in the native protein. This knowledge may also lead to the synthesis of the enzyme models not too far removed from biological reality. ENZYME MODELS From the earliest organic enzyme model recognized by Liebig (30), to the recent models of specific esterase activity exhibited by SH compounds (33) and tlie polyfunctional catalysts of mutarotation (47), a very large number of enzyme models have been studied {cf. 27). Some of them, e.g., the carboxylase models of Langenbeck, show remarkable similarity to enzymes in regard to certain kinetic properties, product inhibition, and inactivation of the catalyst. The polyfunctional catalysts of Swain and Brown exhibit a high substrate specificity and form substrate complexes resembling those formed by enzymes. Study of model reactions has often clarified our thinking about the active center of enzymes and their mechanism of action, but a word of caution should be added concerning the indiscriminate use of model reactions. For example, the chemical oxidation of aldehydes in the presence of phosphates has been used as a model of enzymatic dehydrogenation of aldehydes (52), in spite of the fact that the course and products of the chemical and enzymatic oxidation are quite different. Enzymes as Catalysts The basic concepts of Michaelis concerning enzyme-sub- strate interactions have stood the test of time, although the simple original formulation has undergone some essential alterations. Among the more important factors which required consideration were: the presence of more than one active center, multiple points of substrate attachment, the occurrence of more than one enzyme-substrate intermediate, the participation of multiple substrates, including cofactors and water, and the effect of specific buffers and of pYi on the active center as well as on activating groups. 221 EFRAIM RACKER The kinetic complexities of metabolic processes, such as glycolysis and the citric acid cycle, which are catalyzed by multienzyme systems, have frequently been pointed out. In order to analyze the individual enzymatic steps, it was necessary to separate the catalysts from each other. Now it slowly becomes apparent that the surface of the single enzyme may mirror some of the complexities encountered in multienzyme systems. The fact that a reaction catalyzed by a single enzyme includes the formation of several enzyme-substrate intermediates, required the introduction of the "Michaelis compound" as the rate- limiting step (4,5). It may be confusing at first to learn that pure crystalline glyceraldehyde-3-phosphate dehydrogenase can catalyze five apparently different reactions {cf. 37). One can explain oxidation-reduction, acyl transfer, phosphorolysis, and perhaps even the phosphatase activity exhibited by this enzyme in terms of the over-all process of aldehyde oxidation coupled to phosphorylation. However, there is at present no plausible explanation for the destruction of DPNH in the pres- ence of the enzyme (36). It is very difficult to obtain accurate kinetic data for the individual steps catalyzed by TDH, since some of the "side reactions" interfere with the measurements. Moreover, small modifications in the protein molecule, such as the blocking of the SH groups, may change the ratios of the different catalytic activities. Since oxidation of SH groups occurs during the purification of TDH, a microheterogeneity is introduced which is more treacherous for kinetic studies than gross impurities with unrelated proteins. This difficulty cannot be overcome by the addition of cysteine or GSH, which not only reduce the enzyme incompletely but also interact with the aldehyde substrate. However, fully reduced enzyme, suitable for kinetic studies, can be isolated from rabbit muscle with the aid of ethylenediamine tetraacetate (23), A change in pYL may determine which of a number of possible products is formed by an enzyme. In the case of papain and the cathepsins (15) a decrease in the hydrogen ion con- centration alters the enzyme-catalyzed reaction in such a 222 ENZYMES AS REAGENTS manner that the transfer of an acyl group to an acceptor other than water predominates. The kinetics of an enzyme-catalyzed reaction may also be altered by pH because of a shift to a new rate-limiting Michaelis compound (43). SUBSTRATE-ENZYME INTERACTIONS In the enzyme-catalyzed reaction: E + S . ' ^ ES '-^ E + product Km = '■m 1^2 ~r ^3 ^1 the dissociation constant Kj) for the enzyme-substrate complex (ES) is equal to the Michaelis constant iT^ only when ^3 is very small compared to hi', then K^ = k-i/ki = K^. Experimental data are accumulating which demonstrate that Kj) cannot be equated to Kj^. It was shown for some peroxidases {cf. 4,5) and for succinic dehydrogenase (41) that ^3 is considerably larger than k'l, so that Kd may differ from Kj^ by several orders of magnitude. Similar discrepancies have been recorded for enzyme-coenzyme reactions (49). It appears necessary therefore to evaluate the different rate constants independently. Ingenious methods for the direct (4,5) and indirect (41) determination of the velocity constants have been devised. In a theoretical paper by Foster and Niemann (8), it was pointed out that in multifunctional catalysis, which involves the formation of several reactive intermediates, the experimental values for kz may not represent the velocity constant for the decomposition of the enzyme-substrate complex. Various experimental approaches have been made to the problem of multiple points of substrate attachment. The use of isotopes in the case of symmetrical substrates, the effect of modified substrates, of inhibitors, and of high substrate con- centrations on rate of enzyme activity are among the best known examples. If the enzyme contains two spatially independent points of interaction with the substrate, as shown in Figure 1, 223 EFRAIM RACKER the presence of substrate excess may lead to the formation of inactive enzyme. A modified MichaeUs-Menten equation was derived for this case by Foster, McRae, and Bonner (7) : Ve. (S) V = k: + (S) + (S)7C in which K^ and V^^ are analogous to K^ and F^^ of the Michaelis-Menten equation. The term {S)^/C is an index of the probability of two substrate molecules combining with the ACTIVE COMPLEX INACTIVE COMPLEX Figure 1. enzyme, resulting in the formation of inactive enzyme substrate complex. At low concentrations of substrate the term (S)VC' is negligible ; with increasing substrate concentrations it becomes appreciable, the velocity v decreases. When the concentration of substrate reaches the value of C, the velocity becomes half of maximal ; thus one half of the enzyme molecules is in the form of the inactive, oversaturated enzyme complex. Experimental data on the effect of indoleacetic acid concentration on the growth of oat coleoptile sections fit in a remarkable manner the theoretical curve for a two-point attachment. Indeed, studies on the effectiveness of various indoleacetic acid analogues revealed that two specific groupings on the molecule are required for biological activity. A similar interpretation has been given to the inhibition of acetylcholinesterase at high substrate concentration (cf. 55). An extensive analysis of the mechanism of action of this enzyme has been carried out by Nachmansohn, Wilson, and their collaborators (31,54). They investigated the formation of the enzyme-substrate complex with the aid of ionizable and non- ionizable substrates and inhibitors at various pH values. These kinetic studies revealed some interesting properties of the two sites of the enzyme, which are referred to as the anionic and 224 ENZYMES AS REAGENTS esteratic sites, according" to their interactions witli the quaternary ammonium and the ester moiety of the substrate. A theory of a two-step mechanism of action was proposed which included the rate-Hmiting formation of an acyl enzyme as an intermediate. The acyl group can be hydrolyzed or transferred to an acceptor other than water, e.g., hydroxylamine or alcohol. The in- activation of acetylcholinesterase by inhibitory phosphate esters, such as tetra alkyl pyrophosphate, was shown to be an enzymatic process reversible by suitable nucleophilic replacing agents. SUBSTRATE-SUBSTR.\TE INTERACTIONS Theories of the mode of action of glyceraldehyde-3-phos- phate dehydrogenase and glutamic dehydrogenase which assume interaction between substrates prior to enzyme action have been widely accepted, although no experimental evidence for chemical addition products as intermediates is available. In the case of glyceraldehyde-3-phosphate, it was assumed that phosphate adds to the aldehyde prior to its oxidation to an acyl phosphate {cf. 52). A useful kinetic approach to this problem has been made by Biicher and Garbade (3). The experimental data on the effect of phosphate or arsenate on the apparent Kr„ value for the substrate (glyceraldehyde or glyceraldehyde-3-phosphate) seem to rule out the formation of a glyceraldehyde diphosphate as intermediate. Strecker has presented (45) evidence of a similar nature against the chemical formation of the a-imino compound as intermediate in the reductive amination of a-keto- glutarate to glutamate. Enzymes as Analytical Tools Analysis of biochemical events is dependent on the avail- ability of analytical tools. Isolation procedures and chemical determinations often lack accuracy and specificity. Enzymolo- gists have naturally turned to enzymes as an aid in assays of intermediary metabolites. Kjeldahl, over 70 years ago (19), was probably the first to propose the use of an enzyme as an analytical tool (invertase for sucrose deterixiination). Since then, numerous enzymes have been used for the assay of sub- strates, coenzymes, and enzymes. The obstacle of an unfavor- 225 EFRAIM RACKER able equilibrium, which leads to incomplete utilization of the substrate, can be overcome by the removal of products with secondary enzymes. The availability of spectrophotometers has fostered the development of many sensitive and rapid assay methods. If an enzyme-catalyzed reaction results in no changes in light absorption, it is usually possible to link it to a reaction with suitable spectral properties. Occasionally several enzymes have to be added in excess, while the enzyme to be assayed is added in limiting amounts. The number of complications due to side reactions increases, however, with the number of auxiliary enzymes used. "enzymatic purity" of enzymes In the course of these studies the enzymologist became aware that a new kind of purity is required for his analytical enzyme tools, since the criteria of chemical purity had little meaning in this case. An enzyme preparation though homogeneous accord- ing to the most rigid physicochemical measurements may con- tain an enzyme impurity which represents only a fraction of 1 % of the total protein. The preparation may be worthless for his analysis if the contaminating protein happens to be (and fre- quently is) a very active enzyme which catalyzes a side reaction in his assay system. On the other hand, another preparation less pure according to physicochemical determinations may be quite suitable as analytical reagent. Thus, the presence or ab- sence of contaminating enzymes which give rise to side reactions with substrate, product, or coenzyme determines whether or not an enzyme is usable. Therefore, new criteria of "enzymatic purity" must be established for each enzyme reagent. An example encountered in our laboratory may serve to illustrate the complexities of some of these assays. A preparation of glucose-6-phosphate dehydrogenase from brewers' yeast (20) has been widely used for the quantitative determination of glucose-6-phosphate and of TPN. The enzyme can be used to regenerate TPNH in TPN-linked oxidation-reductions. In combination with hexokinase and glucose it is used for the de- 226 ENZYMES AS REAGENTS termination of ATP. It can be used in an assay for hexokinase or phosphohexose isomerase. In the course of several years during which this enzyme served as a useful reagent in many laboratories, differences in the properties of various preparations probably due to minor variations in the purification procedure were encountered. Thus, some preparations contained traces of a TPNH oxidase or of phosphogluconic dehydrogenase which prevented the achievement of a sharp end point at the time of the complete reaction. Variable amounts of hexokinase, phos- phohexose isomerase, adenylate kinase, and glutathione reduc- tase were found in these preparations. Accurate values for ATP could not be obtained in the presence of adenylate kinase, and an analysis of glucose-6-phosphate or ATP in a sample which contained some oxidized glutathione gave erroneous values owing to glutathione reductase. Occasionally it is possible to make a preparation suitable as a reagent by the use of an inhibitor. For example, treatment with A^-ethyl maleimide has been found to eliminate adenylate kinase activity without inactivating glu- cose-6-phosphate dehydrogenase (25). The suitability of an enzyme for quantitative substrate de- termination is dependent on an appropriate substrate affinity and absence of inhibitory side reactions. Preparations of glu- cose-6-phosphate dehydrogenase from Torula yeast, although of much higher specific activity than the preparations from brew- ers' yeast, were found to react much more sluggishly at low glu- cose-6-phosphate concentrations and were inadequate for assay purposes (44). ANALYSIS OF MULTIENZYME SYSTEMS The determination of an enzyme in crude tissue extracts in which complex chains of metabolically linked reactions take place often poses great difficulties. Measurements of formation of the product or of disappearance of the substrate are compli- cated by the presence of the other members of the multienzyme systems which act on the same compounds. Although blocking of secondary reactions may be successfully used in some instances, in other instances new complications, e.g., "product inhibition," 227 EFRAIM RACKER may arise. Perhaps the most reUable of all the methods of en- zyme assay in crude systems is one used least frequently, since it requires the availability of auxiliary enzymes of "enzymatic purity." The method consists of adding a large excess of the other enzymes of a multistep assay system to allow a more ac- curate determination of the rate-limiting enzyme. Perhaps one should not conclude the discussion of these "prac- tical" aspects of enzymes as reagents without mentioning their usefulness as analytical tools in the determination of chemical structures. This approach, clearly envisaged by Emil Fischer, has served as the key method in the determination of the struc- ture of many coenzymes and is increasingly being used in the elucidation of the structure of proteins and other biological polymers. Enzymes as Reactants In the early years of enzymology, the oxidation of an alde- hyde by a DPN-linked dehydrogenase was presented as: A 1 1 1 1 Enzyme ... ,.-. Aldehyde > Acid (1) ^ DPN When DPN became available in gram quantities and was widely used as an hydrogen acceptor instead of as a catalyst, the reaction was written : Aldehyde + DPN+ ^"''^"' Acid + DPNH + H+ (2) Now that an aldehyde-oxidizing enzyme, glyceraldehyde-3- phosphate dehydrogenase, has become available in gram quanti- ties and the participation of its SH group in the catalysis of alde- hyde oxidation has been demonstrated, the first stages of the reaction sequence can be written as: Aldehyde + DPN+ + SH-enzyme > Acyl-S-enzyme + DPNH + H+ (3) From the physiological point of view, expressions (2) and (3) must be considered as representing Beckman cell artifacts 228 ENZYMES AS REAGENTS far removed from true cellular reality. But the enzymologist has learned a great deal about the mechanism of enzyme action from studies with coenzymes and enzymes as reactants. METHODS OF ANALYSIS OF ENZYMES AS REACTANTS In most instances, enzyme-substrate compounds appear to be unstable. The first direct demonstrations of their existence de- pended on the use of rapid spectrophotometric methods. The appearance of new absorption bands in the case of peroxidases (4) and the disappearance of the DPN-enzyme absorption band of glyceraldehyde-3-phosphate dehydrogenase (38) on addition of the respective substrates, are examples of such studies. On the other hand, the few enzyme-coenzyme compounds investi- gated so far appear to be quite stable (38,49,50). Inhibitors such as /?-chloromercuribenzoate, iodoacetate, and hydroxyl- amine have been most useful for the analysis of enzyme-substrate and enzyme-coenzyme interactions (16,38,49). Isotopically labeled substrates have also been valuable tools in these studies. With C^'*-labeled acetyl phosphate, radioactive acyl glyceralde- hyde-3-phosphate dehydrogenase was prepared. Hydrolysis with proteolytic enzymes resulted in the release of a thiol ester with the properties of acetyl glutathione (24). Formation of a phospho-enzyme in the case of phosphoglucomutase was first suggested by studies with P^^ (14). The use of isotopically labeled substrates or cofactors in incomplete systems (omitting either a substrate or a cofactor), which frequently results in an enzyme-catalyzed redistribution of the label, helps to elucidate reaction sequences. Emphasis should be placed, however, on the use of pure systems for such studies so that exchange reac- tions, due to either contaminating coenzymes or contaminating enzymes, can be ruled out. Important conclusions regarding the mode of enzyme action have been deduced from studying the point of cleavage with isotopically labeled substrates {cf. 21). Finally, valuable information has been obtained from kinetic investigations of the complexes formed between enzymes, co- enzymes, and substrates. It has made feasible a bold study of 229 EFRAIM RACKER these specific interactions in intact cells (5). This investigation represents a new and important approach to the steady-state kinetics of intracellular metabolism. THE MICROCYCLES OF ENZYME-SUBSTRATE INTERACTIONS Catalysis may be looked upon, in many instances, as a cyclic process in which the catalyst undergoes reversible changes. Evidence for this thesis has been obtained in the case of the few enzymes which have been closely examined from this point of view. The enzymologist, hardened by his experiences with com- plex metabolic cycles, now begins to turn to the exploration of enzymes as "microcycles." 6-l-P E-P E G-l,6-P G-6-R Figure 2. Phosphoglucomutase catalyzes the reversible transformation of glucose- 1 -phosphate (G-l-p) to glucose-6-phosphate (G-6-p). The reaction was first written as G-l-p<=^G-6-p. When the func- tion of glucose-l,6-diphosphate (G-l,6-p) as a coenzyme was discovered (28), the reaction was written as: G-l-p + G-l,6-p«=^ G-1 ,6-p + G-6-p. With the elucidation of the role of the enzyme protein as phosphate acceptor (32), the reaction sequence can be represented by a cyclic process which includes all reactants, as shown in Figure 2. The enzyme occurs in muscle extracts as phosphoenzyme (E-p). In the presence of the substrate (either G-l-p or G-6-p), the phosphate group is transferred and glu- cose- 1,6-diphosphate is formed. The latter then returns the phosphate to the enzyme and forms the product (G-6-p or G-l-p). 230 ENZYMES AS REAGENTS Another example of a microcyclic sequence of interactions is catalyzed by giyceraldehyde-3-phosphate dehydrogenase and its pyridine nucleotide coenzyme (Figure 3). DPN combines with the SH-enzyme to form a DPN-enzyme complex (DPN-E) which can be measured by its absorption band at 360 lUfx. The aldehyde interacts with the DPN-enzyme to yield acyl enzyme and reduced DPN. In the presence of phosphate, the acyl enzyme is phosphorolyzed to acyl phosphate and SH-enzyme, which combines again with DPN to regenerate the DPN-enzyme complex (38). ALDEHYDE DPN-E DP N H + H* l+ACCEPTOR) + PHOSPHATE A C Y L- P Figure 3. The enzyme crystallizes from rabbit muscle in the presence of ethylenediamine tetraacetate as the DPN-enzyme complex with 3 moles of DPN per mole. After removal of DPN by treatment with charcoal, the enzyme is somewhat less stable and crystallizes only with difficulty. Exposure of the charcoal- treated enzyme to acetyl phosphate results in the formation of acyl enzyme. Crystallization of the protein from this mixture occurs again quite readily and the crystalline material contains the acetyl enzyme: It gives a positive hydroxylamine test and oxidizes DPNH, thereby forming free acetaldehyde from the acetyl group. With 1,3-diphosphoglycerate, the formation of a phosphoglyceryl enzyme has been demonstrated (26). 231 EFRAIM RACKER Thus, every one of the intermediates of the niicrocycles of glyceraldehyde-3-phosphate dehydrogenase and phosphogluco- mutase can be isolated. It should be pointed out that in both instances this feat has been made possible by the artificial inter- ruption of the cyclic process of catalysis, either by removal of the coenzymes, as with glyceraldehyde-3-phosphate dehydrogenase, or by omission of a phosphate acceptor, as with phosphogluco- mutase. With many enzymes, however, neither of these two approaches is feasible, and, in order to change the course of events, alternative methods, such as the use of inhibitors, must be explored. INHIBITORS An outstanding biochemist once remarked that only un- inhibited investigators use inhibitors in complex biological sys- tems. Pitfalls similar to those encountered in inhibitor studies of multienzyme systems also confront the investigator of a micro- cycle which is catalyzed by a single enzyme. On the other hand, unambiguous studies with inhibitors such as sodium fluoride and iodoacetate have been landmarks in the history of the biochemis- try of glycolysis and of muscular contraction. Inhibitors, used cautiously, have also been valuable tools in the study of enzyme- coenzyme-substrate interactions. The protective action of coenzymes or substrates against in- hibitors has yielded important information about the mode of their interaction with the enzyme. Early studies of Rapkine on TDH with several SH inhibitors indicated an interaction be- tween the SH groups of the enzyme and DPN. Alcohol dehy- drogenase from yeast can be protected against lAA by DPN or ethyl alcohol (c/. 37) ; testosterone dehydrogenase can be pro- tected by DPN against /^-chloromercuribenzoate (48). It should be pointed out that more complex effects may be encountered. Thus, DPN, which protects TDH against iV-ethyl maleimide, increases markedly the susceptibility of the enzyme to lAA. Glyceraldehyde-3-phosphate protects TDH against lAA, but so do some other phosphorylated compounds (e.g., 3-phospho- 232 ENZYMES AS REAGENTS glycerate) which are not substrates and do not react directly with SH groups (24). The inhibitor may block a partial reaction of the cyclic proc- ess of enzyme catalysis and permit a functional separation of a multistep system. For example, iodoacetate inhibits the oxido- reduction catalyzed by TDH, but arsenolysis of the acyl enzyme can still take place (38). Potassium cyanide stabilizes acyl enzyme even in the presence of DPN, without interfering with arsenolysis (26). Tetra alkyl pyrophosphate has been shown (54) to inhibit cholinesterase by forming a phospho-enzyme in- stead of an acyl enzyme. In contrast to the acyl enzyme, the phospho-enzyme is not readily hydrolyzed, and nucleophiiic re- placement agents must be used to reactivate the active center of the enzyme. Oxidized (S-S) TDH, which is devoid of dehydrogenase activity, has been shown to hydrolyze acetyl phosphate (12). A stimulation of the phosphatase action of TDH has also been noted after treatment with iodoacetate (26). An inhibitor can, therefore, not only block a cyclic process but channel it into a side reaction, Iodoacetate alters the properties of this catalyst so fundamentally that instead of acting as an acyl transfer agent, it becomes a catalyst of hydrolysis. This exhibition of new catalytic activities in the presence of inhibitors requires most cautious interpretation of observations obtained with enzymes which have been exposed to maltreatment by enzymologists or histochemists. The activation of unspecific phosphatases by iodoacetate or by maleate, reported in the older literature {cf. 53), may represent a similar alteration of functional SH groups resulting in a change in catalytic activity. EXCHANGE REACTIONS The use of isotopically labeled compounds in biochemical research has led to the discovery of a new group of reactions often referred to as exchange reactions. They may be defined as reactions in which an isotopic label is incorporated into a compound, although no synthesis of the latter has occurred. 233 EFRAIM RACKER There appear to be at least two different kinds of enzyme cata- lyzed exchange reactions ; these will be referred to as ( 7) transfer- exchange reactions, and (2) metabolic exchange reactions. ( 7) The transfer-exchange reactions represent a special case of a general reaction, usually referred to as a transfer reaction : AB + G ' AC + B These transfer reactions are catalyzed by enzymes which are widely distributed in nature. Transaminases, transglycosidases, transketolase, and transaldolase are a few examples of this type of reaction. These enzymes are assumed to form a complex with the substrate and then catalyze the transfer of a portion of the substrate to another acceptor molecule. For example, the amino group of glutamate is transferred to oxaloacetate by a trans- aminase. If, in the above equation, free B can substitute for G as an acceptor, we are dealing with a transfer-exchange reaction which results in no synthesis but can be detected by incorporation of a labeled compound. The exchange takes place at the same atom of the donor molecule A, in contrast to the metabolic ex- change reactions discussed below. (2) The metabolic exchange reactions occur in the course of a cyclic process and are due to the peculiarity of certain reac- tion mechanisms that illustrate a special aspect of enzymes as reactants. The cyclic process of enzyme catalysis may proceed in such a manner that an exchange of atoms takes place between the substrate and the catalyst or coenzyme. For example, a phosphate exchange reaction is catalyzed by phosphoglucomu- tase (see Figure 2). In experiments with P^^-labeled glucose-1- phosphate, the coenzyme G-l,6-diphosphate becomes labeled (46) because the phosphate is transferred from C-1 of G-1, 6-p to C-6 of the substrate G-l-p, which becomes the coenzyme. An analogous action takes place with oxaloacetate, which acts as a catalyst in oxidation of acetyl CoA in the Krebs cycle. The acetyl group of acetyl GoA condenses with one end of OAA, while the other end is actually oxidized in one turn of the cycle. This is not necessarily an essential feature of the cyclic process but is 234 ENZYMES AS REAGENTS due to the peculiarity of the aconitase enzyme, which dehydrates the oxaloacetate-end of citrate rather than its acetate-end. PHYSIOLOGICAL SIGNIFICANCE OF EXCHANGE REACTIONS It is apparent from the above that one must differentiate between exchange reactions and incorporation due to the net synthesis of AB*: A + B* > AB* Carbon 14 from carboxyl-labeled acetate will appear in oxalo- acetate which on decarboxylation can yield pyruvate or phos- phoenol pyruvate. From these three-carbon compounds, glyco- gen containing the carbons of acetate will be formed. It has been known to physiologists for many years that acetate cannot be used for the biosynthesis of glycogen. We are dealing here with an exchange reaction. It is also apparent that it is impossible to draw conclusions about quantitative aspects of biosynthetic pathways from incorporation studies with isotopes only, unless exchange reactions can be ruled out. Although no net synthesis of a peptide bond, for example, can be achieved by transfer exchange reactions, these reactions may participate in biosynthetic pathways. It is very probable that transaminases and transpeptidases contribute to the bio- synthesis of amino acids and peptides. It is nature's privilege to delegate the specific function of reductive amination to glu- tamic dehydrogenase. The glutamate formed by this enzyme from ammonia and a-ketoglutarzte acts as the key middleman for numerous transfer reactions to other keto acids which lead to new amino acids. The physiological role of the metabolic exchange reactions is not as apparent. Since in the course of these curious reactions a spatial redistribution of certain groups (e.g., acetyl or phos- phate) takes place, it might be conceived that reactions of this type play a role in the transportation of groups and compounds across the cell membrane or from one intracellular structure to another. If work is to be accomplished, the exchange must be catalyzed by two different kinds of reactions as shown in Figure 235 EFRAIM RACKER 4, (a) and (b), e.g., phosphorylation with ATP and dephos- phorylation by hydrolysis. This brings us to the general problem of enzymes participat- ing as reactants in specific physiological functions. Interaction of aldehydes with proteins in the process of vision (51), interaction b -> AA+A Figure 4. of nucleotides with the proteins involved in muscular contrac- tion (39), and the role of cholinesterase in the process of trans- mission of nerve impulses (31) may represent examples of the participation of enzymes as reactants in physiological processes. Concluding Remarks We can look upon enzymes as active centers embedded in a protein matrix. The function of the protein molecule is to pro- vide activating groups which increase the rate of catalysis and permit specificity of interaction between the enzyme and its substrate. Perhaps the most striking illustration for this differ- entiation between the active center and the activating group of the protein is the example of the "little enzymes" obtained from hydrolyzed pepsin. These dialyzable fragments catalyze effi- ciently the hydrolysis of a small molecular substrate, but have lost most of their activity with proteins as substrate. Thus, the activating groups of the native enzyme are required for the spe- cific and efficient hydrolysis of the large molecular substrate. Perhaps another function of the protein is to provide the cata- lytic center with the anchors and the biochemical stability which is needed for intracellular localization. Kinetic investigations have received a new impetus during the past ten years. The concept of the polyaffinity of substrates, 236 ENZYMES AS REAGENTS first clearly formulated by Bergmann (2), the kinetic ramifica- tions of the polyaffinity concept of a stepwise interaction be- tween substrate and enzyme, the re-evaluation of the velocity constants, and the existence of complex multiheaded enzymes with multifunctional catalytic activities are among the major developments in this area. They have stimulated new experi- mental approaches and at the same time contributed to a more timid approach regarding the interpretation of kinetic data. It is self-evident from the above considerations that it is very diffi- cult to interpret unambiguously kinetic data obtained with crude enzyme preparations which may contain inhibitors or interfering enzymes. Moreover, the meaning of painstaking studies, even with highly purified enzymes, may be obscured by the presence of side reactions. For example, several times recrystallized pyruvic kinase contains adenylic kinase, and triose phosphate isomerase may be found in several times recrystallized aldolase. Even pure enzymes with multiple heads, such as glyceraldehyde- 3-phosphate dehydrogenase, catalyze side reactions which com- plicate the life of the kineticist. Enzymes have become accepted as analytical tools. Some enzymatic methods used for determination of metabolic inter- mediates (e.g., the various hexose phosphates) have a degree of specificity rarely attained by colorimetric and isolation proce- dures. However, the drawbacks of these enzymatic methods are by no means negligible because of the rigid criteria of purity which have to be applied to the reagents used. In recent years a few crystalline enzymes have become avail- able in large quantities and have permitted an investigation of their participation as reactants in the reactions they catalyze. It has been possible to show that a cyclic process takes place in which enzyme, coenzyme, and substrate interact to produce a sequence of new intermediates. Glyceraldehyde-3-phosphate dehydrogenase can be isolated as an acyl enzyme and phospho- glucomutase as a phosphorylated enzyme. These are some of the currents and undercurrents in present enzymology. What are the perspectives? Hundreds of enzymes 237 EFRAIM RACKER have been described which await further study; many more enzymes will be discovered in the future; nearly endless seems the number of enzymes which might be induced by adaptive processes or might be selected in microorganisms fished from the mud of California. It is clear that the availability of enzymes will not be the limiting factor in the future of enzymology. The purification of enzymes is gradually becoming a routine pro- cedure and biochemists are beginning to attach to it the stigma of a necessary evil. The protein chemists are turning to sequence analysis and to a search of the chemical properties of the active centers and their neighborning groups. The kineti- cists, after collecting essential data on the interaction between the substrate and various intracellular and surface enzymes, are beginning to return to more complex multienzyme systems and even approach the kinetics of the intact cell. Their studies may bring new clues to the great physiological mystery of the mode of substrate entry into the cell. Enzymes as analytical tools will undoubtedly infiltrate further into the laboratories at the ex- treme wings of biochemistry: physical chemistry and medical diagnostics. Many more enzymes will be investigated as reac- tants, and cycle after cycle will appear on the surface of the deep waters of metabolism. References 1. Agren, G., C. H. deVerdier, and J. Glomset, Acta Chem. Scand., 8, 1570 (1954). la. Anfinsen, C. B., Biochim. et Biophys. Acta, 17, 593 (1955). lb. Balls, A. K., and E. F. Jansen, Advances in EnzymoL, 13, 321 (1952). 2. Bergmann, M., Harvey Lectures, Ser. 31 , 37 (1936). 2a. Bier, M., J. Sri Ram, and F. F. Nord, Nature, 176, 789 (1955). 3. Biicher, T., and K. Garbade, Biochim. et Biophys. Acta, 8, 220 (1952). 4. Chance. B., in Modern Trends in Physiol, and Biochem., 1952, 25. 5. Chance, B., in W. D. McElroy and B. Glass, eds.. Mechanism of Enzyme Action, p. 399. Johns Hopkins Press, Baltimore, 1954. 6. Colvin, J. R., D. B. Smith, and W. H. Cook, Chem. Revs., 54, 687 (1954). 6a. Dixon, G. H., S. Go, and H. Neurath, Biochim. et Biophys. Acta, 19, 193 (1956). 6b. Dryer, W. J., and H. Neurath, J. Biol. Chem., 217, 527 (1955). 238 ENZYMES AS REAGENTS 7. Foster, R. J., D. H. McRac, and J. Bonner, Proc. Natl. Acad. Set. U. S., 38, 1014 (1952). 8. Foster, R. J., and C. Niemann, Proc. Natl. Acad. Set. U. S., 39, 371 (1953). 9. Fraenkel-Conrat, H., R. S. Bean, and H. Lineweaver, J. Biol. Chem., 177, 385 (1949). 10. Gale, E. F., and J. P. Folkes, Nature, 173, 1223 (1954). 11. Gergely, J., Federation Proc, 9, 176 (1950). 12. Harting, J., and S. F. Velick, J. Biol. Chem., 207, 867 (1954). 13. Herriott, R. M., and J. H. Northrop, J. Gen. Physiol., 18, 35 (1934). 14. Jagannathan, V., and J. M. Luck, J. Biol. Chem., 179, 569 (1949). 15. Johnston, R. B., M. J. Mycek, and J. S. Fruton, J. Biol. Chem., 185, 629 (1950). 15a. Kalnitsky, G., and E. E. Anderson, Biochim. et Biophys. Acta, 16, 302 (1955). 16. Kaplan, N. O., and M. M. Ciotti, J. Biol. Chem., 211, 431 (1954). 17. Keller, P. J., and G. T. Cori, Biochim. et Biophys. Acta, 12, 235 (1953). 18. Kennedy, E. P., and S. W. Smith, J. Biol. Chem., 207, 153 (1954). 19. Kjeldahl, J., Compt. rend. trav. lab. Carlsberg, 1, 189 (1881). 20. Kornberg, A., J. Biol. Chem., 182, 805 (1950). 21. Koshland, D. E., in W. D. McElroy and B. Glass, eds., Mechanism of Enzyme Action, p. 608. Johns Hopkins Press, Baltimore, 1954. 22. Krebs, E. G., J. Biol. Chem., 200, 471 (1952). 23. Krimsky, I., and E. Racker, J. Biol. Chem., 198, 721 (1952). 24. Krimsky, I., and E. Racker, Federation Proc, 13, 245 (1954). 25. Krimsky, I., and E. Racker, unpublished experiments. 26. Krimsky, I., and Racker, E., Science, 122, 319 (1955). 27. Langenbeck, W., Ergeh. Enzymforsch., 13, 207 (1954). 28. Leloir, L. F., R. E. Trucco, C. E. Cardini, A. C. Paladini, and R. Ca- putto, Arch. Biochem., 19, 339 (1948). 29. Levy, M., and O. Blumenfeld, personal communication. 30. Liebig, J. von, Ann., 113, 1 (1860). 31. Nachmansohn, D., and L B. Wilson, Advances in Enzymol., 12, 259 (1951). 32. Najjar, V. A., and M. E. Pullman, Science, 119, 631 (1954). 33. Perenyi, L., Acta Physiol, et Pharmacol. Neerl., 5, 87, 97, 103 (1954). 34. Perlmann, G. E., Nature, 173, 406 (1954). 35. Petermann, M. L., and A. M. Pappenheimer, Jr., J. Phys. Chem., 45, 1 (1941). 36. Rafter, G. W., S. Chaykin, and E. G. Krebs, J. Biol. Chem., 208, 799 (1954). 37. K2icktv,E., Physiol. Revs., 35, 1 1955. 38. Racker, E., and L Krimsky, J. Biol. Chem., 198, 731 (1952). 39. Szent-Gyorgyi, A., in Chemistry of Muscular Contraction. Academic Press, New York, 1951. 239 EFRAIM RACKER 40. Schaffer, N. K., S. C. May, Jr., and W. H. Summerson, J. Biol. Chem., 206, 201 (1954). 41. Slater, E. C, and W. D. Bonner, Biochem. J. {London), 52, 185 (1952). 42. Smith, E. L., J. R. Kimmel, D. M. Brown, and E. O. P. Thompson, J Biol. Chem., 215, 67 (1955); and E. L. Smith, personal communica- tion. 43. Smith, E. L., in W. D. McElroy and B. Glass, eds., Mechanism of Enzyme Action, p. 210. Johns Hopkins Press, Baltimore, 1954. 44. Srere, P. A., unpublished experiments. 45. Strecker, H. J., Arch. Biochem., 46, 128 (1953). 46. Sutherland, E. W., W. Cohn, T. Posternak, and C. F. Gori, J. Biol. Chem., 180, 1285 (1949). 47. Swain, G. G., and J. F. Brown, Jr., J. Am. Chem. Soc, 74, 2538 (1952). 48. Talalay, P., and M. M. Dobson, J. Biol. Chem., 205, 823 (1953). 49. Theorell, H., and B. Ghance, Acta Chem. Scand., 5, 1127 (1951). 50. Velick, S. F., in W. D. McElroy and B. Glass, eds.. Mechanism of Enzyme Action, p. 491. Johns Hopkins Press, Baltimore, 1954. 51. Wald, G. W., Ann. Rev. Biochem., 22, 497 (1953). 52. Warburg, O., H. Klotsch, and K. Gawehn, Z. Naturforsch., 9b, 391 (1954). 53. Williams, H. L., and E. M. Watson, J. Biol. Chem., 135, ?>31 (1940). 54. Wilson, I. B., in W. D. McElroy and B. Glass, eds., Mechanism of Enzyme Action, p. 642. Johns Hopkins Press, Baltimore, 1954. 55. Zeller, E. A., Advances in EnzymoL, 8, 459 (1948). 240 ATTEMPTS AT THE FORMULATION OF SOME BASIC BIOCHEMICAL QUESTIONS FRITZ LIPMANN, Biochemical Research Laboratory, Massachusetts General Hospital and the Department of Biological Chemistry, Harvard Medical School, Boston, Massachusetts The fogginess in which tJie physical-chemical aspects of the inner working of the living organisms had in the past been shrouded, inevitably invited mystification of one kind or another. In counterreaction, the past generation of biochemists was almost religiously concerned with the task of demystifying life. Through their pioneering, the fog lifted during the twenties and thirties. But now we witness the development of a new phase, in which the hesitant, skeptical, and largely analytical approach is being discarded. The depth to which the understanding of organismic methodology has reached demands reorientation. At this stage it seems most important to ask the right questions. I will not attempt much more than to try to raise a few such relatively naive questions and even these in not too explicit a manner. The approach toward clarification appears to be most hopeful by way of defining those distinctive attributes of the living state which have been thought to indicate a novel and specifically "living" phenomenon. We will first consider briefly the energy problem, which is relatively the farthest ad- vanced, and then try problems specifically related to duplication. 241 FRITZ LIPMANN The Energy Problem The recognition of the relative simplicity of the energy supply system of the living organism has made it possible to understand a large number of biosynthetic mechanisms (15). We now feel justified to state with confidence that the energy problem can be related to a boundary condition of the living system as a whole and does not represent an intrinsic character- istic of the life process except that it is a necessary premise for its existence. The living organism is to be defined as a system with a boundary condition of a constant influx of energy from the outside. Such a system, however, in no way transcends the laws of thermodynamics. In the past, a suspicion often crept in that need might arise for a modification of the second law. Recently a tendency developed to build into a definition of life the con- cept of a negative entropy (20) which, however, is not a charac- teristic of life but rather of the environmental conditions which permitted life to develop. The earth is indeed, if isolated and considered as a quasi-autonomous system, appropriately repre- sented by including the incidental radiation energy as a boundary condition, abstracting it, as we mostly tend to do anyway, from the solar system and the universe. Although, in its elaboration of metabolic work, the living organism acts in the capacity of a refinery, the essential boundary condition almost always refers back to the influx of energy from the outside into the earth sphere. Patternization Much emphasis is generally placed on our recently ac- quired capacity to understand the biochemical mechanisms for building up structures such as steroids, carotenoids, and similar complex molecules, which had previously been elucidated through organic chemical analysis. Although these complex molecules have their important significance for organismic life, the most important problem is the problem of the building up of specific and unique structures by fusing a number of otherwise 242 BASIC BIOCHEMICAL QUESTIONS unlike units through a uniform Hnking mechanism. This creates unique and specific surface and structure patterns which we call proteins, nucleic acids, and mucopolysaccharides. The primary determinants are a fixed sequential arrangement. So far this type of problem has not occurred in man-made chemistry and it is rather puzzling. Energy is needed first for the joining of the common links in the backbone. Secondly, the lining up of a defined sequential arrangement, the patterni- zation, represents a structural energy equivalent or rather, an increase in entropy (Maxwell's "demon"), which is not quite easily defined with our present notions. Patternization, I feel, is dominant in duplication, replication, and mutation. It is possibly important to reiterate that the energy requirement for patternization may be divided into (7) a well-defined caloric equivalent for the joining of the links in the respective backbone structures and (2) an "energy of position," the directing into a specific order. The latter is biologically the most important. We meet here a novel situation, the biochemical definition of which has no well-understood examples to fall back upon. It has become the meeting ground between biochemistry and genetics. To define the problem in all its facets, a fusion be- tween biochemical and genetic principles will be needed. It is most likely not mere coincidence that metabolic chem- istry has come to a point where the problem of energy distribu- tion apparently is entering a new stage. The great successes of the past twenty years were obtained by a methodology which aimed at extracting enzymes, coenzymes, and such from the cell. In this manner, rather complex systems could be separated and reunited successfully as, for example, the glycolytic system. The limitation, however, of this approach becomes apparent now. The old methodology of cleaving and separating seems to fall short because the complex and more intrinsic functions of the cell appear to depend on macromolecular arrangements of greater specificity. Therefore, from the analytical point of view, the intrinsic involvement of structure in certain metabolic systems requires new approaches which are slowly developing. It is in 243 FRITZ LIPMANN part the previous success of the methodology of cleavage into the smallest possible units which now acts almost like a mental block. The common denominator in many of our difficulties seems our inability to understand structure in biochemical terms. This is particularly evident in the approach to protein synthesis. With the analysis of protein synthesis, the energy problem now tangibly merges with the propagation problem. This is ob- vious if one realizes that many forms of specificity are an ex- pression of a particular sequential arrangement of the amino acids, a sequential arrangement into chains of various shapes, together with an interlocking through interchain links such as, e.g., disulfide links. A lively discussion of the manner in which these sequences are built up has recently sprung up, motivated in particular through ingenious models for deoxynucleic acids (23). These nucleic acids appear to carry a directing force, often referred to as the code of replication. Metabolically speaking, there is still a link missing from predetermined nucleic acid chain se- quences leading to determination of amino acid chain sequences, although dependence of protein synthesis on nucleic acid struc- tures appears to be quite real. In spite of still meager facts, there is a need to start discussion in this biochemical vacuum. Before embarking on particulars, it seems important to realize that the synthesis of a fixed sequence can be effected methodologically either by a predominant space pattern, a template, or by a timing device analogous to the assembly line. In reality, it most likely will be effected by a mixture of both. It is my impression that presently template processes have been in the foreground of discussions, including my own (16), because of the greater ease in devising template models. The assembly line procedure, however, is really met with mostly in biochemical systems, including a few cases with sequential arrangement on a relatively small scale (10,21). These problems are now in the foreground because it is here that genetics and biochemistry meet, namely, where the trans- 244 BASIC BIOCHEMICAL QUESTIONS mission of the code laid down in the genetic material is trans- lated into chemical mechanisms. A chemical methodology of code transmission, it appears, consists of arranging specific sequences through standard links in the line-up. Possibly a master methodology may exist for a specific sequential arrange- ment of unlike units through a common linkage system which forms the backbone structure of the resulting compound. How- ever that may be, patternization or sequential arrangement in- cludes, but largely transcends, what we have been mostly con- cerned with so far, namely, mere mechanisms of linking. Synthesis of Peptidic Links It has at times appeared that the main problem in under- standing protein synthesis is to tackle the mechanism of peptide bond formation. However, to understand protein synthesis truly, the understanding of peptide bond formation is a premise rather than an end in itself. It will be wise, nevertheless, first to obtain a background by reviewing our present understanding of the mechanism of peptide bond formation. It seems that uniformly, peptide linking starts with the activation of the carboxyi group rather than of the amino group. The primary source of energy appears to be the energy-rich phosphate bonds of ATP, the energy currency. Unfortunately, the finer mech- anism of the conversion of phosphate into active acyl grouping is still only imperfectly understood. There are different subtypes which are of considerable interest. The conversion of phos- phoryl to active acyl may occur (7) by a pyrophosphate elimina- tion from ATP, directly or possibly through other nucleoside triphosphates (NTP) or (2) by phosphorolysis of the terminal phosphate of ATP or other NTP's. These two mechanisms at first looked like interchangeable types of procedure. On close inspection, however, they might represent two distinct and rather different mechanisms. The pyrophosphate elimination, as it seems to develop more and more clearly, leads to a linking be- tween the acyl grouping and die nucleotide part of the NTP (2) 245 FRITZ LIPMANN with the elimination of a molecule of pyrophosphate (1,3,12,18), while phosphorolysis apparently leads in some manner to the formation of acyl phosphate with elimination of nucleoside diphosphate (NDP) (5,7,13,21). In other words, the pyro- phosphate elimination represents an activation through linking the carboxyl to the nucleoside by way of a monophosphate bridge, forming an NMP^^acyl. On the other hand, phosphorolysis seems to represent a discarding of the nucleotidic part of the energy carrier and a more or less direct linking of the carboxyl to the phosphate (5,13). Such a pyrophosphate elimination scheme was first observed in a CoA-linked acyl activation. A similar mechanism appears to apply to the synthesis of the peptidic bond in pantothenic acid (18). But more important, an analogous mechanism has now been found to operate in the activation of normal amino acids (11). In both cases, the acyl '^phosphonu- cleotide seems not to be freely diffusible but rather tightly linked to the activating protein. This interpretation is mainly based on isotope exchange reactions and should rather be con- sidered as somewhat preliminary. Nevertheless, it may serve as background for a discussion of the mechanism of peptide bond formation in protein synthesis. Protein Synthesis With this still sketchy information on mechanisms for peptide bond synthesis, we now proceed much less securely to possible mechanisms of lining up the different amino acids into a specific protein pattern. Sequential arrangement of the amino acids obviously is the dominant problem before us. If the apparatus is available to line up a predetermined sequence of amino acids most of which will be quite long, twenty, forty, or more links, the final shaping of the molecule might be expected to be wholly or partly a spontaneous one. In any case, this phase of final shaping will be neglected at the present, and our focus will be exclusively on sequential arrangement as a back- ground for specificity, even though this almost certainly is a somewhat precarious simplification. 246 BASIC BIOCHEMICAL QUESTIONS There are good indications for the assumption that the carboxy-activated amino acids enter directly into the mech- anism of sequential arrangement (8,22,24). Furthermore, the amino acids may enter as an amino acid'^P-nucleoside. The activated amino acid seems, however, to approach the assembly line not isolated but still fixed to the amino acid specific enzyme protein (11). As a first approximation to a mechanism, we then consider a specific enzyme for each amino acid which as a war- head carries the amino acid linked to the phosphoryl of a mono- nucleotide, eventually to effect selective linking into chains. There is, on the other hand, a certain likelihood that the amino acid chain is deposited and grows along on ribonucleic acid. The incorporation of radioactive amino acids takes place in special microsomes rich in nucleic acid (4,24). Recent ob- servations (14) have indicated that the microsome carrying out amino acid synthesis contains approximately equal amounts of nucleic acid and protein. This observation seems to counter- indicate a nucleoprotein as responsible for the direction of the amino acids into sequences. The amount of protein would be too small to permit such an interpretation. But the particular activated amino acid approaches the assembly line in association with its specific enzyme. An enzyme-mononucleotidc'^amino acid might react with a specific nucleic acid which by its own sequential arrangement of nucleotides is supposed to direct the sequential patternization of a protein. One process of progressive chain elongation has been suc- cessfully analyzed, namely, fatty acid synthesis (17). It ap- peared in that case that chain elongation always occurred be- tween two activated molecules. But the energy of only one energy-rich link is utilized, namely, the thioester bond to the carboxyl which enters the • COCH2 • link. To compare this methyl-carboxyl linking to the amino-carboxyl linking in a pep- tide is not too far fetched, since it has been found (6) that the methylene-carbonyl bond is hydrolyzed by chymotrypsin, which makes the biochemical comparison between • CO — CH2 • and • GO — NH • linking rather plausible. The importance of this 247 FRITZ LIPMANN consideration lies in the fact that here we have a case where chain growth is terminal and is maintained in such a manner that each addition prepares for the following by permitting reaction only between two activated carboxyl derivatives, the energy of only one of which is used in the process. The terminal activated carboxyl remains intact for the next step of chain elongation. Furthermore, although fatty acid synthesis impresses as a homo- geneous process where long, straight, uniform chains are synthesized from indentical two-carbon fragments, obviously during the chain elongation the growing chain is changing con- stantly. At least three different enzymes participate with different specificity for activation of short, intermediate, and long fatty acids (19). The process, therefore, is not a homogeneous process, but a handling of a changing molecule which changes through the process of elongation itself. Although a long- chain fatty acid is homogeneous as compared to a polypeptide chain, the two processes of chain elongation may have common features. It is possible, though no indication has appeared so far, that chain elongation of the polypeptide chain proceeds similarly through linking of an activated carboxyl waiting at the polypeptide terminal for a newly arriving, likewise activated amino acid. However that may be, such considerations do not help much in solving the cardinal question of how activated amino acids are lined up in the specific sequence particular for the special protein or enzyme. In all present considerations the mech- anism of the linking process still presses into the foreground be- cause there is some information present. The mechanism of directing into proper sequence must be determined through some kind of coding mechanism which seems to involve a trans- lation, in Gamow's terminology (9), of specific nucleotide se- quential into amino acid sequences. Conclusion The understanding of the basic mechanisms of joining mole- cules together has opened the possibility of approaching the 248 BASIC BIOCHEMICAL QUESTIONS problems of duplication, reproduction, and individualization which I like to bring together under the term patternization. This means that essentially they all may be reduced to the problem of joining building stones into a specific reproducible sequence or pattern. With the energy problem more or less out of the way, it becomes more apparent that patternization is distinct from, although superimposed upon, the process of link- ing. It is astonishing to realize that the more one proceeds with the understanding of the workings of the organism, the more one becomes concerned with methodological problems. Strangely, the prying into the mystery of life reduces more and more to an unraveling of a sometimes rather unusual and unexpected methodology of the cell. On the other hand, it is significant that the complexity and methodology of man-made instruments seem to converge increasingly towards the complexity of or- ganismic methodology and instrumentation. References 1. Beinert, H., D. E. Green, P. Hele, H. Hift, R. W. Van Korff, and C. V. Ramakrishnan, /. Biol. Chem., 203, 35 (1953). 2. Berg, P., J. Am. Chem. Soc, 77, 3163 (1955). 3. Boyer, P. D., O. J. Koeppe, W. VV. Luchsinger, and A. B. Falcone, Federation Proc, 74, 185 (1955). 4. Borsook, H., C. L. Deasy, A. J. Haagen-Smit, G. Keighley, and P. H. Lowy, J. Biol. Chem., 787, 839 (1950). 5. Cohn, M., Phosphorus Metabolism, 7, 374-376 (1951). 6. Doherty, D. G., and L. 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